Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31578
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa...    27   7.5  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    27   9.9  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    27   9.9  
At2g04030.2 68415.m00372 heat shock protein, putative strong sim...    27   9.9  
At2g04030.1 68415.m00371 heat shock protein, putative strong sim...    27   9.9  
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil...    27   9.9  
At1g30220.1 68414.m03697 sugar transporter family protein simila...    27   9.9  

>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
           family protein similar to SP:O54965 RING finger protein
           13 {Mus musculus} RING zinc finger protein
          Length = 234

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 210 CWLAYIMISPRRSLFMP 160
           CW++++M+ PRR LF+P
Sbjct: 99  CWISWLMLMPRR-LFVP 114


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 143 MTDDAYGINKERRGEIMMYANQQLLARMRLERLSHKMCDVKPMMWNEP 286
           M ++A  I K  R E+ ++   Q   +     LSHK     P+  N P
Sbjct: 811 MAENASAILKRARSEVRLHTMNQDETKSLSRTLSHKTFSEHPLFENPP 858


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 487 RLLQAYNSAVTTLDLSSKDTLSD 419
           +L+ A+N AVT L L+S ++L D
Sbjct: 647 QLVNAHNDAVTVLPLASNESLGD 669


>At2g04030.2 68415.m00372 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 777

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 349 LADGHFITAGKTDFRPVTGL*GLVPHHRLNVTH 251
           LA  HF T G+ +FR +  + G+ P +  +VT+
Sbjct: 363 LAHTHFTTEGEVEFRSILYIPGMGPLNNEDVTN 395


>At2g04030.1 68415.m00371 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 780

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 349 LADGHFITAGKTDFRPVTGL*GLVPHHRLNVTH 251
           LA  HF T G+ +FR +  + G+ P +  +VT+
Sbjct: 363 LAHTHFTTEGEVEFRSILYIPGMGPLNNEDVTN 395


>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
           protein contains Pfam profile: PF04981 NMD3 family
          Length = 516

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 29  WRKGVRRSLSQNDVMSYFMEDVD 97
           WR G R +L+   ++ YF+ DV+
Sbjct: 304 WRSGFRSALTSRQLVKYFVFDVE 326


>At1g30220.1 68414.m03697 sugar transporter family protein similar
           to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
           [Homo sapiens]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 580

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 11  NLVVIDWRKGVRRSLSQNDVMSYFMEDVDLNTYMYY 118
           N++ +   K VRR L     +  F + V +NT MYY
Sbjct: 262 NMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYY 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,577
Number of Sequences: 28952
Number of extensions: 194145
Number of successful extensions: 455
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)