Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31577
(451 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 87 1e-32
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 25 1.0
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 3.1
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_39764| Best HMM Match : YscO (HMM E-Value=1.5) 27 7.2
SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6) 27 9.5
SB_37509| Best HMM Match : PAE (HMM E-Value=0) 27 9.5
SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9) 27 9.5
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 27 9.5
SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28) 27 9.5
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 27 9.5
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 27 9.5
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 27 9.5
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 86.6 bits (205), Expect(2) = 1e-32
Identities = 38/45 (84%), Positives = 42/45 (93%)
Frame = +3
Query: 6 SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 140
SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 600 SGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect(2) = 1e-32
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 240 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 419
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 420 VK 425
VK
Sbjct: 703 VK 704
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.6 bits (51), Expect(2) = 1.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 25 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 183
+PC ++ C + +S+ V ++K P P TL ++G + +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
Score = 23.8 bits (49), Expect(2) = 1.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 7 PGPQPPSPCNVRP 45
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 51 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 170
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 165 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 293
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 192 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 371
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 372 LLCTVLKSCGEECVIAVKANTALD 443
T KS GEE V A ++ +LD
Sbjct: 344 SAATYGKSDGEENV-AQESEESLD 366
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 400 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 269
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 207 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 374
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 375 LCTVLKSCGEEC 410
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 276 GSGSHHPRYQSVGSLRASRGVRPC-CVWRDRYL 181
G+GS HP Y +V V PC C W+ + L
Sbjct: 517 GAGSPHPHYHAVQGANGQYSV-PCNCTWQPQDL 548
>SB_39764| Best HMM Match : YscO (HMM E-Value=1.5)
Length = 182
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 412 THSSPQDFSTVHNNSLPLSKSVRN 341
TH + Q+F+ +H NS L+++ +N
Sbjct: 92 THKNSQEFTRIHKNSQELTRTHKN 115
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 412 THSSPQDFSTVHNNSLPLSKSVRN 341
TH + Q+F+ +H NS +++ RN
Sbjct: 112 THKNSQEFTRIHKNSQEFTRARRN 135
>SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6)
Length = 183
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 82 GRPFSITKPFLRRAEHCMGKVAEAPE 5
GRP +P L EHC GK+ E P+
Sbjct: 134 GRPRE--QPVLAEVEHCHGKLTERPK 157
>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
Length = 483
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/48 (20%), Positives = 19/48 (39%)
Frame = +1
Query: 73 RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKISVPPHTTWTY 216
+++H R + C P ++ + L V + PH +W Y
Sbjct: 334 QIIHVRGVSCEPPDYREAQRMRTNSIDLTRGHVSRRSLPNKPHPSWAY 381
>SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9)
Length = 203
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 82 GRPFSITKPFLRRAEHCMGKVAEAPE 5
GRP +P L EHC GK+ E P+
Sbjct: 154 GRPRE--QPVLAEVEHCHGKLTERPK 177
>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -1
Query: 391 FSTVHNNSLPLSK-SVRNCVPRSP---SGILRSSRR 296
F+T++NN PL K + + R P G+LRS ++
Sbjct: 532 FTTIYNNCFPLKKVKTKKSITRKPWLTKGLLRSIKK 567
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/48 (20%), Positives = 19/48 (39%)
Frame = +1
Query: 73 RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKISVPPHTTWTY 216
+++H R + C P ++ + L V + PH +W Y
Sbjct: 1103 QIIHVRGVSCEPPDYREAQRMRTNSIDLTRGHVSRRSLPNKPHPSWAY 1150
>SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 565
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -1
Query: 391 FSTVHNNSLPLSK-SVRNCVPRSP---SGILRSSRR 296
F+T++NN PL K + + R P G+LRS ++
Sbjct: 307 FTTIYNNCFPLKKVKTKKSITRKPWLTKGLLRSIKK 342
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 217 GTSMLCVEGQISSYFLPLKISIPTK*TLAWPCFPVL 110
GT L +GQ+S +FL + IS P L CF +L
Sbjct: 962 GTDKLISDGQVSHFFL-IDISYPCNVLLDKDCFILL 996
>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 872
Score = 26.6 bits (56), Expect = 9.5
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +3
Query: 183 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 350
D+ S H +D+P+ E++ + +D ++ +D L E L+IPD T +
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648
Query: 351 DFDSGKELLCTVLKSCGEEC 410
SG E LC VLK C
Sbjct: 649 SVCSGLEALCIVLKRLAYPC 668
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 448 YLSRAVF---ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAI 278
Y + A+F + A S QD+ +H NS + N +P+ S I ++ +P +
Sbjct: 77 YATMAIFPPNTVPAPPQDSTQDYREIHTNSFYFQHQMSNTLPKEES-IQQADESAPHDIL 135
Query: 277 RV 272
V
Sbjct: 136 SV 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,014
Number of Sequences: 59808
Number of extensions: 360594
Number of successful extensions: 1140
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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