Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31577
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   188   1e-48
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   183   6e-47
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   180   3e-46
At1g56345.1 68414.m06477 pseudouridine synthase family protein l...    29   1.1  
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   1.5  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    29   1.9  
At3g05830.1 68416.m00654 expressed protein                             29   1.9  
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot...    28   2.5  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   3.4  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   3.4  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   4.4  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    27   4.4  
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont...    27   5.9  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    27   7.7  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  188 bits (459), Expect = 1e-48
 Identities = 82/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
 Frame = +3

Query: 6   SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYED 185
           +GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V IDIF  KK ED
Sbjct: 13  AGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLED 72

Query: 186 ICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQLRTDFDS 362
           I PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L  Q+++ FD 
Sbjct: 73  IVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDD 132

Query: 363 GKELLCTVLKSCGEECVIAVK 425
           GK+L+ +V+ + GEE + A+K
Sbjct: 133 GKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  183 bits (445), Expect = 6e-47
 Identities = 81/141 (57%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
 Frame = +3

Query: 6   SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYED 185
           +GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V IDIF  KK ED
Sbjct: 13  AGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLED 72

Query: 186 ICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDS 362
           I PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L TQL+  F+ 
Sbjct: 73  IVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEE 132

Query: 363 GKELLCTVLKSCGEECVIAVK 425
           GK+++ +V+ + GEE + A+K
Sbjct: 133 GKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  180 bits (439), Expect = 3e-46
 Identities = 80/141 (56%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = +3

Query: 6   SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYED 185
           SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V IDIF  KK ED
Sbjct: 13  SGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLED 72

Query: 186 ICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDS 362
           I PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L  Q+R  FD 
Sbjct: 73  IVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDE 132

Query: 363 GKELLCTVLKSCGEECVIAVK 425
           GK+++ +V+ S GEE + AVK
Sbjct: 133 GKDIVVSVMSSMGEEQICAVK 153


>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 322

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 389 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQVTIV-SHQGQVAIIRDISQLVVFALHVGY 213
           +HGA +  AA++V   L     +RD E   +V  V S + +   + D++ ++V     G 
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232

Query: 212 VHVVCGGTD 186
             + CGG D
Sbjct: 233 RELSCGGDD 241


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 309 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 410
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 107 CGHFNNLAWTTLQHNETVFTQGRTLHGEGG 18
           CGH   +A TT  H   VFT G T HG+ G
Sbjct: 479 CGHTFTVALTTSGH---VFTMGGTAHGQLG 505


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +3

Query: 132 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 311
           AK  + G+D    K  ED+ P         V+ +D ++T + D+  + LM  +G  +   
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241

Query: 312 KIPDGDLGTQLRTDFDSGKELL 377
           K  +  L  Q RTD D  K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263


>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 436

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -3

Query: 296 VTIVSHQGQVAIIRDISQL---VVFALHVGYVHVVCGGTD-IFILFTIEDINPNQVNFSV 129
           + ++ H    +IIR +      + F L  GY+ V     D +F  F   + NP +    V
Sbjct: 16  LVLIQHADSSSIIRYLPGFEGPLPFELETGYIGVGQKEEDQLFYYFIKSENNPEEDPLLV 75

Query: 128 AVLSGFGCGHFNNLAW 81
            +  G GC  F+ L +
Sbjct: 76  WLTGGPGCSSFSGLVY 91


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 437 SCVCFDGDDALLTAGFQHGA 378
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 82  HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYPT*SAKTTN 243
           HA+ LKC     +   T+K+ W+  +   ++S   S      TT T  T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 222 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 371
           V+R+  +++      Y  L ADN    +   +  G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +3

Query: 252  ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 386
            +SD+  L + A  G  D+ +++   D DL  Q++     + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191


>At2g27680.1 68415.m03354 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 384

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 180 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI 317
           ++I  S   MDV  +    +   D ++DGYL  +    DL+E+ KI
Sbjct: 147 QNIDISRKRMDVAALDMLQFHWWDYANDGYLDALKHLTDLKEEGKI 192


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 27/98 (27%), Positives = 44/98 (44%)
 Frame = -3

Query: 329 VTIRDFEVLTQVTIVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINP 150
           +TI D +   +VT+      V  +  + ++VV    +G   VV   T +F   T      
Sbjct: 673 ITIPDLK--DEVTLTRTVTNVGTVDSVYKVVVEP-PLGIQVVVAPETLVFNSKTKNVSFT 729

Query: 149 NQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQGRT 36
            +V+ +  + +GF   +F NL WT   HN T+    RT
Sbjct: 730 VRVSTTHKINTGF---YFGNLIWTDSMHNVTIPVSVRT 764


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,610,548
Number of Sequences: 28952
Number of extensions: 238009
Number of successful extensions: 734
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)