Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31568
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 31 0.37
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 31 0.37
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 28 4.6
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 28 4.6
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 28 4.6
U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical pr... 27 8.0
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 27 8.0
U29535-5|AAY55856.1| 159|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC084196-1|AAK29950.2| 99|Caenorhabditis elegans Hypothetical ... 27 8.0
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = -2
Query: 281 WVFWRP-----RTCLRGQLERNRLASAERNSDTPFYLWRECSLV*PW-IWSEY 141
W W P TC G+++RNR+ RN D P C + P WS +
Sbjct: 351 WTLWSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSW 403
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = -2
Query: 281 WVFWRP-----RTCLRGQLERNRLASAERNSDTPFYLWRECSLV*PW-IWSEY 141
W W P TC G+++RNR+ RN D P C + P WS +
Sbjct: 351 WTLWSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSW 403
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 472 HQHC*RDLVSHVSVNSSMTGLQAFQLVQIVYR*ILMDDNY--CFVTERRIRFFIGSVLL 302
H+HC R S N +GL AF ++ VYR +D + CF +R + LL
Sbjct: 147 HEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKDELL 205
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 472 HQHC*RDLVSHVSVNSSMTGLQAFQLVQIVYR*ILMDDNY--CFVTERRIRFFIGSVLL 302
H+HC R S N +GL AF ++ VYR +D + CF +R + LL
Sbjct: 147 HEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKDELL 205
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 472 HQHC*RDLVSHVSVNSSMTGLQAFQLVQIVYR*ILMDDNY--CFVTERRIRFFIGSVLL 302
H+HC R S N +GL AF ++ VYR +D + CF +R + LL
Sbjct: 147 HEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKDELL 205
>U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical
protein F47G3.3 protein.
Length = 479
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 266 AAKIPNQDFV--VFQEYRTDEEPDAPFRYEAVIVIH 367
AAK+ N++ + +F+E+ E+PD YE + V++
Sbjct: 130 AAKVKNKNAISALFEEFLAAEKPDRSTAYEYICVMY 165
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.0
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +2
Query: 41 ILITLICACVNAAKTTYKICVPSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQ 220
+++T CA VN T ++ DMVD KSK TL A D +E L +
Sbjct: 119 LVLTSSCAAVNEGYTQDRVFDEDSWSNLESDMVDCYIKSK-TLAEKAAWDFIERL--PED 175
Query: 221 RQADFVPVDPEDMYVAAKIPNQ--DFVVFQEYRTDEEPDAP 337
++ ++P ++ A I Q + +++ E P AP
Sbjct: 176 KKFPMTVINPTLVFGPAYITEQGASITLMRKFMNGEMPAAP 216
>U29535-5|AAY55856.1| 159|Caenorhabditis elegans Hypothetical
protein C25H3.15 protein.
Length = 159
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 299 KRRSPDWVFWRPRTCL 252
+RR DW+ WR TCL
Sbjct: 110 ERRRQDWLLWRNGTCL 125
>AC084196-1|AAK29950.2| 99|Caenorhabditis elegans Hypothetical
protein Y55D5A.2 protein.
Length = 99
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 160 LGFGRNIHHVLTRFQVL*WHAYFICSFRCVHTCTN 56
L + RN + L RF+ + + F+ FR VH+C++
Sbjct: 11 LFYFRNFSNNLNRFKFISTNTIFLQDFRKVHSCSH 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,130
Number of Sequences: 27780
Number of extensions: 291487
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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