Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31567
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   5.1  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   5.1  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 167 DRRSSASSCPQ-S*LLCYCADQFLCXRP*SAPCCQVLXECL--LINVEEANFFVV 12
           +RR ++S+  +   LLC C ++  C R  +  C   + E L  L+ ++E  F V+
Sbjct: 777 ERRVASSTIDEFQKLLCLCCNRVDCVRQLALECMNYIMETLPHLLGIKEILFSVL 831


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 69  AARCTSRPXTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 194
           A   TS   +  +I T +  +++ +T    TPI S  TSSNS
Sbjct: 158 ATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNS 199


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +2

Query: 239 GPKPFNQYTFIPSALDFYQTSARDPAXYQLYKRIVQY---IIEFKQYQVPYTQEALHFVG 409
           G KP + Y+    +   +  S  +     LY    Q    +   K++  P +  ALH   
Sbjct: 185 GNKPSSVYSLAAHSRGLWVLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSE 244

Query: 410 LKISDVKVDKMVTFFDHFDFDAFNT 484
            K+     DKMV ++D    DA +T
Sbjct: 245 KKVLSGSWDKMVYYWDLNTGDAIST 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,056
Number of Sequences: 5004
Number of extensions: 32181
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)