Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31567
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235     30   0.96 
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   5.1  
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213...    27   6.8  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    27   8.9  

>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
          Length = 416

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 155 TNADLFEEDFLQFYQRSYXVNARRVLGAGPKPFNQYTFIPSALDFYQTSARDP 313
           T A     D LQFY  S+ + A    G G  P++ +T   +A   +Q+  + P
Sbjct: 80  TIAHASPHDLLQFYPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTFQSYYQQP 132


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 377 PYTQEALHFVGLKISDVKVDKMVTFF 454
           PYTQ AL FV L +   K+D+  T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531


>09_03_0177 -
           13120816-13120941,13121032-13121137,13121231-13121305,
           13121385-13121461,13122462-13122549,13122638-13122699,
           13122807-13122863,13122960-13123049,13123186-13123251,
           13123530-13123619,13123711-13123804,13123915-13124213
          Length = 409

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 347 YIIEFKQYQVPYTQEALHFVGLKI 418
           ++ EF+ ++ P+  EA+H V L+I
Sbjct: 102 FLQEFRNWETPWAMEAMHTVALEI 125


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 469 EVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 356
           EV ++K C  F  F +   Q   +  +LC+ ++VL  +
Sbjct: 417 EVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,208
Number of Sequences: 37544
Number of extensions: 206517
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)