Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31566
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   2.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 507 DRSFTLVNWQRTQWKKYICVLR 442
           DR+  LV  Q++  K+Y+CVLR
Sbjct: 112 DRATRLVKSQQSAGKEYVCVLR 133


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 270 CXQYXHSXACMNKLEYIRLKSNAFLYLWXKTSNFKVLISFGKI 142
           C  Y +  A  N  EYIR  +  FLY+    S   +L S  K+
Sbjct: 41  CIFYVYKIALCN--EYIRFLAKCFLYILRCMSTVSLLSSAHKM 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,575
Number of Sequences: 5004
Number of extensions: 26542
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)