Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31566
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11980.1 68417.m01907 MutT/nudix family protein low similarit...    27   5.7  
At2g36850.1 68415.m04519 glycosyl transferase family 48 protein ...    27   7.5  

>At4g11980.1 68417.m01907 MutT/nudix family protein low similarity
           to SP|P54570 ADP-ribose pyrophosphatase (EC 3.6.1.13)
           {Bacillus subtilis}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 309

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 228 EYIRLKSNAFLYLWXKTSNFKVLISFG 148
           E+I+++   +  LW KT++ KVL+S G
Sbjct: 263 EFIKVRLIPYRELWRKTADAKVLMSIG 289


>At2g36850.1 68415.m04519 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1680

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 192 DKGKRLI-LNVCIPIYSCMXMSGHIXNNHKTNIKYVI*HLKKIQ 320
           D+G+R   ++VC+ +  C+    HI N+ +     +  +LKK+Q
Sbjct: 687 DEGRRWYSISVCLNLNVCLICEDHISNSIEQGSLAITLNLKKLQ 730


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,609,365
Number of Sequences: 28952
Number of extensions: 118120
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)