Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31564
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 162 2e-41
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 60 2e-10
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 58 7e-10
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 7e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 51 1e-07
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 49 3e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 1e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 47 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 3e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 46 3e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 1e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 4e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 1e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 40 1e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 1e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 40 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 3e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 6e-04
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 38 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.002
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.004
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.004
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.010
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.022
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.039
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.16
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.36
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 0.63
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 0.83
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 0.83
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 1.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.5
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 1.5
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 1.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.9
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 1.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 1.9
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 2.5
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 2.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 3.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 3.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 4.5
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 25 7.8
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 7.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 162 bits (394), Expect = 2e-41
Identities = 73/155 (47%), Positives = 112/155 (72%)
Frame = +2
Query: 5 RKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 184
R+ R+ ++ FTNVY+KN + +++ D+F ++G ITS ++ + RGFGF
Sbjct: 246 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGF 305
Query: 185 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 364
V + + + A++A ELN KE +GK LYVGRAQKK ER++EL++++EQ+K E++ +YQGV
Sbjct: 306 VNYANHECAQKAVDELNDKEY-KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV 364
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 469
NL++KNL D +DDERL+ EF+ FGTITSAK+M ++
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE 399
Score = 85.4 bits (202), Expect = 4e-18
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Frame = +2
Query: 5 RKXREKELGEKAKLF--TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGF 178
RK E+ EK + N+++KN ++ DE LK F +G ITS K+M + G S+GF
Sbjct: 347 RKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGF 406
Query: 179 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 346
GFV + P+ A +A E+N + ++ GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 407 GFVCYTTPEEANKAVTEMN-QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
Score = 80.6 bits (190), Expect = 1e-16
Identities = 48/136 (35%), Positives = 72/136 (52%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
NV++KN ++ L D F +G+I S KV + GN++G+GFV F+ ++A A +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG L+ K +YVG + ERQ K E LK+ N+Y+KNLD I ++
Sbjct: 229 NGM-LLNDKKVYVGHHVSRRERQS----KVEALKA------NFTNVYIKNLDTEITEQEF 277
Query: 413 RKEFAPFGTITSAKVM 460
F FG ITS ++
Sbjct: 278 SDLFGQFGEITSLSLV 293
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 59.7 bits (138), Expect = 2e-10
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +2
Query: 50 TNVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERA 220
+N+YVKN + L+D+F +G I S + Y + G S+G+GFVAF +AA RA
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 221 CIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVK 379
LNG +V K ++V A++K++R + L+ F + SE+ + L+VK
Sbjct: 442 KDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
Score = 34.3 bits (75), Expect = 0.010
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 365 NLYVKNLDDTI--DDERLRKEFAPFGTITSA 451
NLYVKNLDDT+ +L F+PFG+I S+
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSS 413
Score = 28.7 bits (61), Expect = 0.48
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITS 448
+YV N+D + DE + K F+ +G + S
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVES 45
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITS--HKVM-----------YKDDGNSRGFGFVA 190
+ +YV N SDE + F KYG++ S +++ +K N +GFV
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVK 76
Query: 191 FEDPDAAERACIELNGKELVEGK 259
F + ++ E + G L + K
Sbjct: 77 FVNAESIEEVLKDAKGMTLGQRK 99
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 58.0 bits (134), Expect = 7e-10
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = +2
Query: 53 NVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERAC 223
N++VKN ++ + + L+++F K+GRI S + Y S+G+GFV+F P A +A
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 328
LNG L K L+V A+K+ +R+K L F Q
Sbjct: 480 NTLNG-VLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 38.3 bits (85), Expect = 6e-04
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Frame = +2
Query: 8 KXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG---- 175
K EK K ++YV N L ++FE +G + ++ + S
Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 176 --FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL----KS 337
F F+ FE+ +A+ A LNG +G L V + +L+ +Q+
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSF-QGNTLKVEYTHIVERYKNKLENGVDQIHHSNNE 124
Query: 338 ERLTRYQGVNLYVKNLDDTIDDERL 412
+ R+ + Y K T+ + R+
Sbjct: 125 KAKIRFSKIEKYTKETRPTVSEVRV 149
Score = 29.9 bits (64), Expect = 0.21
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 365 NLYVKNLDDTI--DDERLRKEFAPFGTITS 448
NL+VKNLDD I + ++L + F+ FG I S
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKS 449
Score = 29.5 bits (63), Expect = 0.27
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 332 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 445
K++R T+ +++YV NL T L + F PFG +
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFS 47
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.0 bits (134), Expect = 7e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V N G D +DE L F +Y + KV+ +G +RGFGFV+F+D D +A E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 236 GKELVEGKPLYVGRA 280
GK + +P+ + RA
Sbjct: 92 GK-YIGSRPVKLSRA 105
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 50.8 bits (116), Expect = 1e-07
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIEL 232
V+V + D+ L FE+YG I +V M G S+G+G+V FE P+AA +A +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA-KAAVAA 323
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG + ++G+ + + + + + ++ ++L+ ++V NL ++ L
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSE-PSDTVFVGNLSFNATEDDL 382
Query: 413 RKEFAPFGTITSAKV 457
F G I S ++
Sbjct: 383 STAFGGCGDIQSIRL 397
Score = 40.3 bits (90), Expect = 1e-04
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 232
V+V N + +++ L F G I S ++ G +GFG+V F D D+A++ C+E+
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEM 426
Query: 233 NGKELVEGKP 262
NG + G+P
Sbjct: 427 NG-HFIAGRP 435
Score = 32.7 bits (71), Expect = 0.029
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +2
Query: 278 AQKKAERQKELKRKFEQLKSERLTRY--------QGVNLYVKNLDDTIDDERLRKEFAPF 433
++ ++ + E KRK E ER + + ++V L +DD+ L +EF +
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 434 GTITSAKVMLE 466
GTI A+V+++
Sbjct: 287 GTIVGARVIMD 297
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 49.2 bits (112), Expect = 3e-07
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGF 178
P++ +E EK ++V D ++E ++ F ++GR+ +M KD G RGF
Sbjct: 234 PKRAIPREEQEKT---AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGF 290
Query: 179 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY- 355
GFV +E+ A E + + GKP+ V RA KA + R Y
Sbjct: 291 GFVTYENESAVEATMSQ--PYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYA 348
Query: 356 QGVNLY 373
Q +N+Y
Sbjct: 349 QNMNMY 354
Score = 44.4 bits (100), Expect = 9e-06
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 232
+++ + +D+ L+D FE++G + VM G SRGFGF+ F++P +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV---M 221
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELK 313
+ + ++GK + RA + E++K K
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAK 248
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.6 bits (108), Expect = 1e-06
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Frame = +2
Query: 5 RKXREK-ELGEKAKL---FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR 172
RK RE EL A F + V N + +DE +K +FE +G I + D S+
Sbjct: 321 RKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK 380
Query: 173 GFGFVAFEDPDAAERACIELNGKELV-EGKPLYVGRAQKKAERQKELKRKFEQ 328
GFG++ + +P +A A ++NG +L + +G + E + ++F++
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDE 433
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 47.2 bits (107), Expect = 1e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV N SD L D+F G + ++ Y+ G S+GFG V FE+ + A + +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 236 GKELVEGKPLYVGRA 280
G G+PL + A
Sbjct: 342 GYR-YGGRPLQLSYA 355
Score = 33.1 bits (72), Expect = 0.022
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Frame = +2
Query: 98 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 277
LKD+F + G + + +G SRG G V A A L+ + + G+ L V R
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM-GRTLEV-R 256
Query: 278 AQKKAERQKELKRKFEQLKSERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAK 454
+ A K E L + +YV NL D L F G++ A+
Sbjct: 257 LDRFAH------HKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRAR 310
Query: 455 VMLE 466
+ E
Sbjct: 311 IAYE 314
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/81 (19%), Positives = 38/81 (46%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
VYV N LK+ + G + + +++ +G S+G + + + A A L+
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 236 GKELVEGKPLYVGRAQKKAER 298
++ + G+ +Y+ +++ R
Sbjct: 128 NQKFM-GRLVYIREDREQNAR 147
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.0 bits (104), Expect = 3e-06
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +2
Query: 98 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 277
L+ F K+G++ K+ K G GF FV +D AAE A LNG E ++G+P+ V
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTE-IDGRPIAVDW 182
Query: 278 AQKK 289
A K
Sbjct: 183 AVSK 186
Score = 44.8 bits (101), Expect = 7e-06
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 226
+ ++V+N + L + F G I V+ + G +RG+GFV F + A+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI-DD 403
EL K+L G+ L + A + ++ E+ + + + + L ++NL +I
Sbjct: 65 ELKNKKL-HGRILRLDFATPR--KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKP 121
Query: 404 ERLRKEFAPFGTITSAKVMLEDG 472
+ L F+ FG + K+ + G
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGG 144
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 161 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 259
G S+GFGF+ F A A LNG+E+ K
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKK 568
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 46.0 bits (104), Expect = 3e-06
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Frame = +2
Query: 5 RKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 184
+ R E+ + + TN+YV NF + + + +F YG + + +R F +
Sbjct: 651 KSIRGHEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCY 710
Query: 185 VAFEDPDAAERACIELNGKELVEGKPL--YVGRAQKKAERQKELKRKFEQLKSERLTRYQ 358
V PD A A ++L+ K L E P+ ++ ++ R + Y+
Sbjct: 711 VQMRKPDEAHNA-LQLHKKLLEEKYPIQVFISDPLRRTPRSGAV--------------YE 755
Query: 359 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 457
G LYV N+D ++++ + F +G + S ++
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRI 788
Score = 41.1 bits (92), Expect = 8e-05
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV N +++ ++ F YG++ S ++ K +GFG+V AE A +
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIP-KRFNQHKGFGYVVMTTNQDAENA-LSAA 816
Query: 236 GKEL-------VEGKPLY-VGRAQKKAERQKELKRKFEQLKSERLT-------RYQGVNL 370
GK+L V KP + + + + + L + FE +S +++ + + +L
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 371 YVKNLDDTIDDERLRKEFAPFGTI 442
V N+D T+++ RLR F +G +
Sbjct: 877 GVTNVDGTVNEARLRSLFESYGKL 900
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
++++N +++ LK +F +G++ H + K N +GF ++ F D D A RA +EL
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 233 NGKELVEGKPLYVGRAQKKA 292
+ K +G+ L+V A+ ++
Sbjct: 385 DAKPF-QGRLLHVLPAKARS 403
Score = 35.5 bits (78), Expect = 0.004
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN------SRGFGFVAFEDPDAAER 217
+YVKN E + +F+ S + K D S GFGFV F+D +A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 218 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 397
A +NG +++G L + + + + E+++ + ++ +G + +KNL
Sbjct: 681 AMHAMNG-FVLDGHKLEIKLSHQGVDAAAEVRK-------QDSSKPKGTKILIKNLPFEA 732
Query: 398 DDERLRKEFAPFGTITSAKV 457
+ ++ +G + S +V
Sbjct: 733 TKKDVQSLLGAYGQLRSVRV 752
Score = 33.9 bits (74), Expect = 0.013
Identities = 26/115 (22%), Positives = 50/115 (43%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T + +KN + + + ++ + YG++ S +V K D ++RGF F F A A
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDT 394
L L+ G+ L + A +++ E++ E ++ K L +T
Sbjct: 781 LKNTHLL-GRHLVLQYASNAT--MDDMQHAIEKMAKEANAEAAAPSITGKRLIET 832
Score = 26.6 bits (56), Expect = 1.9
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Frame = +2
Query: 62 VKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAA--ERACIELN 235
VKNF S E L +F +G + +++ G F+ D A + A +
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELG--RILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIK 567
Query: 236 GKEL-VEGKPLYVGRAQKKAERQKELKRKF--------EQLKSERLTRYQGVNLYVKNLD 388
L +E P V K + EL +K E++ +E + +YVKNL+
Sbjct: 568 SSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKVGTEDIESLDTATIYVKNLN 627
Query: 389 DTIDDERLRKEFAPFGTITSAKV 457
+ E +K F P SA +
Sbjct: 628 FSTKQEEFQKVFKPLEGYLSAVI 650
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 20 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFE 196
++ G + N++V N + +L D F G++ + +D+ G S+G+GFV+++
Sbjct: 89 QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148
Query: 197 DPDAAERACIELNGKELVEGKPLYVGRAQK---KAERQKELKRK 319
+ A+ A IE + + KP+ V A K K ER ++ +
Sbjct: 149 SFETAD-AAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAER 191
Score = 42.7 bits (96), Expect = 3e-05
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR-GFGFVAFEDPDAAERACIEL 232
+Y+ N E +D +L ++ + G + + + NS GFGF F E AC L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
N +L GKP+ V RA + + G NL+V NLD +D+ L
Sbjct: 73 NQVKLF-GKPIRVNRASQ----------------DRGVNTLIGANLFVGNLDPLVDERVL 115
Query: 413 RKEFAPFGTITSAKVMLED 469
F+ G + A + D
Sbjct: 116 YDTFSALGQLVKAPQVARD 134
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 42.3 bits (95), Expect = 4e-05
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 44 LFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERA 220
L +++V ++ L+ +F K+G +T ++M + SRGFGF++F + A A
Sbjct: 99 LGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158
Query: 221 CIELNGKELVEGKPLYVGRAQK 286
LN +E G+ L V +A++
Sbjct: 159 IDNLNSQEFY-GRVLNVQKAKR 179
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 40.3 bits (90), Expect = 1e-04
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 232
+Y+ N + ++ + ++ + +G + S +++ DG+S+GF F F++P AE A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 233 NGKELVEGK 259
+GK+ K
Sbjct: 372 DGKDTYGNK 380
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 40.3 bits (90), Expect = 1e-04
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 226
T + VKN + L D F++ G + Y D+G RG F F P+ A+
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261
Query: 227 ELNGKELVEGKPLYV--GRAQKKAERQKELKRKFEQLKSER 343
LNG E + G+ L V R AER+K K K Q + R
Sbjct: 262 TLNGYE-INGRRLRVEWKRQLPAAEREKVEKAKKRQAEERR 301
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
VYV N + ++E + D+F++ G + S + V+ + G +G+GF + DP A A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 233 N 235
N
Sbjct: 67 N 67
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 39.9 bits (89), Expect = 2e-04
Identities = 36/122 (29%), Positives = 56/122 (45%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T ++V + E + D F+ YG+I K+M GFGFV ED A +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIVND 56
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
GKE + G + V A+ + R++E R+ K R R G L V+NL + + +
Sbjct: 57 FQGKEFM-GSRIVVEPARGE-RRRRENFRESAASKYPR-PRRTGFRLIVENLSEDVSWQD 113
Query: 410 LR 415
L+
Sbjct: 114 LK 115
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 14 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYKDDGN-SRGFGFV 187
REK + + ++ +++V + + ++ + +F +Y S K+M N SRG+GFV
Sbjct: 176 REKSISKASEY--SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFV 233
Query: 188 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 295
F D + + A E+ G ++ +P+ VG A K++
Sbjct: 234 RFTDENDQKSALAEMQG-QICGDRPIRVGLATPKSK 268
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 39.1 bits (87), Expect = 3e-04
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERA 220
++V N + +D LK+ F + G+I ++M ++D G +GFGFV F D D +A
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKA 285
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+++KN + E + D+F +YG + ++ + +RG FV +E+ A RAC +L+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV--RQIRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 236 GKELVE 253
G ++
Sbjct: 72 GYNFMD 77
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 37.5 bits (83), Expect = 0.001
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 226
T + +KN E+L +F + Y D+G RG F F P+ A+
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291
Query: 227 ELNGKEL------VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 370
LNG E+ VE K +++ ER K+ KR E+ K++ + + N+
Sbjct: 292 VLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAVEERKNQLKSPFSVANI 345
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.5 bits (83), Expect = 0.001
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKY----GRITSHKV---------MYKDDGNSRGFGFVAF 193
++YV ++E LK+MF+ Y RI + + + RGFGFV+F
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 194 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 325
+ + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 266 ANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 36.3 bits (80), Expect = 0.002
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2
Query: 44 LFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERAC 223
L T V+V + S++ L+ F+ +GRI + K+ + +G GFV + + AAE+A
Sbjct: 295 LNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF-----GKGCGFVQYSEKSAAEKAI 349
Query: 224 IELNG 238
+ G
Sbjct: 350 NTMQG 354
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAA 211
NVY++ + SDE L ++G+++S K + + N +G+GF FE+ +A
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
Score = 35.9 bits (79), Expect = 0.003
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
TN+Y+ N +++ + +F K +I S++V+ SRG GF +D AE +
Sbjct: 384 TNLYISNLPLHWNESDISTLF-KPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINK 442
Query: 230 LNGKELVEG-KPLYVGRA----QKKAERQKELKRKFEQLKSERLTRYQGVN 367
N L PL + A QKK + Q + +R + + LT+ N
Sbjct: 443 FNNFVLDPALPPLQIRFADSTDQKKFKGQTQKRRLWRAREYSVLTKGMTAN 493
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV F + L FE +G + + SR F FV +ED AE A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 236 GKELVEG 256
G+ L G
Sbjct: 69 GRRLERG 75
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.004
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +2
Query: 59 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNG 238
+V N D ++ L D F + G + V+ SRGFG+V FE D A + L+G
Sbjct: 97 HVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLS-AALALSG 154
Query: 239 KELVEGKPLYVGRAQKKAERQKE 307
++L+ G+P+ + A+ + +E
Sbjct: 155 EDLM-GRPVRITVAEPRRSFARE 176
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.010
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+Y+ N D +++ + +F ++G + + V K+ G S+GF F+ +ED + A +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 233 NGKELVE 253
+L++
Sbjct: 93 TNVKLLD 99
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.1 bits (72), Expect = 0.022
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 209 AERACIELNGKELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 379
+++ ++ KEL+E K A K Q++L + E L++++ + ++YV
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVG 60
Query: 380 NLDDTIDDERLRKEFAPFGTITSAKVMLE 466
N+D ++ E L+ FA G++ ++ +
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTILCD 89
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.3 bits (70), Expect = 0.039
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTI 442
N+Y+ N DD++ ERL+++F FG I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRI 130
N+Y+ N + + E LK+ FE++G I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.16
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = -3
Query: 258 LPSTSSLPFNSMQALSAASGSSKATKPKPLELPSSLYITL*LVMRPYFSNISFNISSEKS 79
+PSTSS ++ +LS++S SS A+ S + + P ++ + + SS S
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTASSSS--SSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
Query: 78 SPKFFTYTLVNSLAFSPSSFSRXL 7
S T + ++S + S SSFS L
Sbjct: 298 SSPTSTSSTISSSSSSSSSFSSTL 321
Score = 30.3 bits (65), Expect = 0.16
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = -3
Query: 252 STSSLPFNSMQALSAASGSSKATKPKPLELPSSLYITL*LVMRPYFSNISFNISSEKSSP 73
S+SS +S + S+ SS ++ P S++ + P ++ S ISS SS
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP--TSTSSTISSSSSSS 314
Query: 72 KFFTYTLVNSLAFSPSSFS 16
F+ TL +S S SSFS
Sbjct: 315 SSFSSTLSSSSMSSSSSFS 333
Score = 26.6 bits (56), Expect = 1.9
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = -3
Query: 252 STSSLPFNSMQALSAASGSSKATKPKPLELPSSLYITL*LVMRPYFSNISFNISSEKSSP 73
S+SS P ++ +S++S SS + SS+ + P S S ISS SSP
Sbjct: 295 SSSSSPTSTSSTISSSSSSSSSFSSTLSS--SSMSSSSSFSSSPTSS--SSTISSSSSSP 350
Query: 72 KFFTYTLVNSLAFSPSSFS 16
+++ S + S SSFS
Sbjct: 351 SSSSFSSTTSSSKSSSSFS 369
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.36
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 95 MLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
+L D+F KYG++ K++++ F F+ F+ AA A
Sbjct: 381 LLVDLFSKYGKVIDCKIIHQ--SKKPAFAFLRFDSQQAAYAA 420
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.3 bits (60), Expect = 0.63
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -3
Query: 252 STSSLPFNSMQALSAASGSSKATKPKPLELPSSLYITL*LVMRPYFSNISFNISSEKSSP 73
++S+LP ++ +A + S AT P L P+S + + ++ F + S
Sbjct: 242 ASSTLPVSTSEATVSFSTDIPAT-PSTLSSPASSSSSYLVETSSTLTDSVFTTVTATSDS 300
Query: 72 KFFTYTLVNSLAFS 31
TYTL+NS+ S
Sbjct: 301 SVITYTLINSVTSS 314
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 0.83
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
NVY + + + E L+ + +YG I S K + +R GFVA+ + A +A
Sbjct: 501 NVYFSHISDSLTTEELELILRQYGEIESIKYL-----KNRSSGFVAYTNISNAMKA 551
Score = 27.1 bits (57), Expect = 1.5
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK 154
NV++ N + ++ +++ F K+G+I K++ K
Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK 333
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 0.83
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +2
Query: 293 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 400
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 1.5
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +2
Query: 167 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV---GRAQKKAERQKEL---KRKFEQ 328
S G F FE+ D A+ EL+GK++++ V + +K E +R+F++
Sbjct: 90 SLGLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEEREFKE 149
Query: 329 LKSER--LTRYQGVNLYVKNLDDTIDDERLRKEFAP 430
+ R LT Y G + ++ + + RK P
Sbjct: 150 REHLRSWLTDYYGRDQFISYYGNRVSVNWNRKSDVP 185
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.5
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 252 STSSLPFNSMQALSAASGSSKATKPKPLELPSSLYITL*LVMRPYFSNISFNISSE-KSS 76
+TSS P+++ ++S + + T P P SS M P S+ + S ++
Sbjct: 166 ATSSFPYSTDVSVSTGTSTDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNT 225
Query: 75 PKFFTYTLVNSLAFSPSS 22
F ++++S + S SS
Sbjct: 226 SSFLPSSVISSASLSSSS 243
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 1.5
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 116 KYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLY--VGRAQKK 289
KY + ++ KV + D+GN+ F + ED L L E + K+
Sbjct: 589 KYKK-SADKVYFDDEGNAIPFYAMNTEDTFQKAGDPAALIASHLAEERKALEKADITDKE 647
Query: 290 AERQKELKRKFEQLKSERLTR 352
RQK+L++K + + ER+T+
Sbjct: 648 TVRQKQLEKKRRRQELERITQ 668
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 1.9
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +2
Query: 140 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 319
K Y D+ R F+ + E+A +G + G PL K ER K+ K+K
Sbjct: 83 KRRYADEYYDRTDPFIDDAELYIEEKAAATKDGFFVFSG-PLVAEGDTVKIERSKKTKKK 141
Query: 320 FEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
+ S V+ V + D + DD R
Sbjct: 142 KKTSLSNATHPAPAVSAVVASADASFDDSR 171
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 1.9
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 252 STSSLPFNSMQALSAASGSSKATKPKPLELP--SSLYITL*LVMRPYFSNISFNISSEKS 79
S+SS+P S + S +S SS ++ P SS +IT + + S ++ SS S
Sbjct: 204 SSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT-MSSSTFISTVTVTPSSSSS 262
Query: 78 SPKFFTYTLVNSLAFSPSSFS 16
S + +LA + S S
Sbjct: 263 STSSEVPSSTAALALNASKAS 283
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 1.9
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +2
Query: 125 RITSHKVMYKDDGNSRG-FGFVAFEDP-DAAERACIELNGKELVEGKPLYVG---RAQKK 289
+IT+ KDD +GF F D +AER +EL E + +P Y+ + KK
Sbjct: 49 QITAASDASKDDNYDASIYGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKK 108
Query: 290 AERQKELKRKFEQLKSERL 346
+R L R+ LK L
Sbjct: 109 RKRDLLLARERALLKKNEL 127
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 1.9
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 224 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 397
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 398 DDER 409
D+ R
Sbjct: 393 DECR 396
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 317 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 445
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 2.5
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI---TSHKVMYKDDGNSR 172
P + ++ E AK+ T+ Y G D S + + E RI T K +Y + N
Sbjct: 312 PSELTSQDFKELAKM-TDGYS---GSDISIVVRDAIMEPVRRIHTATHFKEVYDNKSNRT 367
Query: 173 GFGFVAFEDPDAAERACIELNGKELVEGK 259
+ DPDA E + +E+N ++++E K
Sbjct: 368 LVTPCSPGDPDAFESSWLEVNPEDIMEPK 396
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR---GFGFVAFEDPDA 208
T V +KN F+ +ML+D + + T + + D ++ G+ F+ F +P +
Sbjct: 597 TTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYAFINFIEPQS 652
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 140 KVMYKDDGNSRGF---GFVAFEDPDAAERACIELNGKELVEGKPL 265
KV Y +DG S + FE DAA A + + L+ G P+
Sbjct: 15 KVNYYEDGESGAILKTCCIEFESQDAARNALERQSTQRLISGNPI 59
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 95 MLKDMFEKYGRITSHKVM---YKDDGNSRGFGFVAFED 199
MLK EK TS K+ Y+ S G GF+A ED
Sbjct: 1 MLKWAIEKDNYTTSEKIGLNDYRHVHESLGIGFIALED 38
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 106
P EK++ +KAKL N + G+ ++ +D
Sbjct: 625 PSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD 659
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 281 QKKAERQKELKRKFEQLKSERLTRYQGVNL 370
+K E+Q EL R+ L+ R + G+N+
Sbjct: 180 RKDREKQLELTRRLSHLQKRRELKAAGINI 209
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
+YV L +I+ L F+ FG++++ +++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,611
Number of Sequences: 5004
Number of extensions: 29856
Number of successful extensions: 205
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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