Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31564
(473 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 159 9e-40
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 159 1e-39
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 153 6e-38
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 152 1e-37
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 149 7e-37
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 137 4e-33
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 116 6e-27
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 109 9e-25
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 66 1e-11
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 65 2e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 62 2e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 61 3e-10
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 60 8e-10
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 60 8e-10
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 60 8e-10
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 60 1e-09
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 59 2e-09
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 58 2e-09
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 58 3e-09
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 58 3e-09
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 58 3e-09
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 57 7e-09
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 57 7e-09
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 57 7e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 56 9e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 56 9e-09
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 55 2e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 55 3e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 55 3e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 55 3e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 55 3e-08
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 54 4e-08
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 54 4e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 5e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 54 7e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 54 7e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 54 7e-08
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 54 7e-08
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 54 7e-08
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 52 2e-07
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 52 2e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 52 2e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 52 2e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 2e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 52 2e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 52 2e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 52 2e-07
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 52 3e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 52 3e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 51 5e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 51 5e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 50 6e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 50 6e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 50 6e-07
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 8e-07
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 50 1e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 50 1e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 50 1e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 49 2e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 49 2e-06
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 49 2e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 49 2e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 48 2e-06
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 48 2e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 48 3e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 48 4e-06
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 48 4e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 46 1e-05
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 1e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 46 1e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 46 1e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 45 2e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 45 2e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 45 2e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 45 2e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 2e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 45 2e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 45 3e-05
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 45 3e-05
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 45 3e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 45 3e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 44 4e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 44 4e-05
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 44 4e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 4e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 44 4e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 44 5e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 5e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 44 5e-05
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 9e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 43 9e-05
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 1e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 42 2e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 42 2e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 42 2e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 2e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 2e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 41 4e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 41 5e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 41 5e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 41 5e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 5e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 41 5e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 40 7e-04
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 40 9e-04
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 39 0.002
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 39 0.002
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 39 0.002
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 39 0.002
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.002
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.003
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.003
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.003
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 38 0.003
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 38 0.003
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.003
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 38 0.003
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 38 0.005
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 38 0.005
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 37 0.006
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 37 0.006
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 37 0.006
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.006
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 37 0.008
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 37 0.008
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 37 0.008
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 36 0.014
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 36 0.014
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 36 0.019
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 36 0.019
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 36 0.019
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.019
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 35 0.024
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 35 0.032
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.032
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.032
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.032
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.032
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.032
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.043
At2g15500.1 68415.m01774 hypothetical protein 34 0.043
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 34 0.043
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 34 0.057
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 34 0.057
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.057
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.057
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 33 0.075
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 33 0.099
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.099
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.099
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 33 0.099
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 33 0.13
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 33 0.13
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.17
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.23
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 31 0.30
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 31 0.30
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.40
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 0.70
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 0.70
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 0.92
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 0.92
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 0.92
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp... 30 0.92
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 1.2
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 1.6
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 1.6
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 1.6
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 29 1.6
At3g12930.1 68416.m01611 expressed protein contains Pfam domain ... 29 1.6
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 29 2.1
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 2.8
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 28 2.8
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 2.8
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 28 3.7
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 3.7
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 28 3.7
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 3.7
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 28 3.7
At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2) ide... 27 4.9
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 4.9
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 27 4.9
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 4.9
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 27 6.5
At5g18610.1 68418.m02203 protein kinase family protein contains ... 27 6.5
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 27 8.6
At3g15110.1 68416.m01911 expressed protein 27 8.6
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 8.6
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain... 27 8.6
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 27 8.6
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 27 8.6
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 27 8.6
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 159 bits (386), Expect = 9e-40
Identities = 83/152 (54%), Positives = 105/152 (69%)
Frame = +2
Query: 5 RKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 184
RK + +K K FTNVYVKN E +D+ LK F +YG I+S VM DG SR FGF
Sbjct: 211 RKEERESAADKMK-FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGF 269
Query: 185 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 364
V FE+P+ A RA LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+ ++ G+
Sbjct: 270 VNFENPEDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGL 328
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
NLYVKNLDDT+ DE+LR+ FA FGTITS KVM
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVM 360
Score = 92.7 bits (220), Expect = 1e-19
Identities = 45/94 (47%), Positives = 63/94 (67%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
N+YVKN + +DE L+++F ++G ITS KVM G S+G GFVAF A R E+
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 334
NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 389 NGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
Score = 80.6 bits (190), Expect = 5e-16
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
N++VKN + ++ L + F G I S KV G SRG+GFV F+ D+A+ A +L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 233 NGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
NGK ++ K ++VG +K ER+ K KF N+YVKNL + D+
Sbjct: 195 NGK-VLNDKQIFVGPFLRKEERESAADKMKF-------------TNVYVKNLSEATTDDE 240
Query: 410 LRKEFAPFGTITSAKVMLEDG 472
L+ F +G+I+SA V++ DG
Sbjct: 241 LKTTFGQYGSISSA-VVMRDG 260
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 159 bits (385), Expect = 1e-39
Identities = 82/151 (54%), Positives = 103/151 (68%)
Frame = +2
Query: 8 KXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFV 187
K + GEK K FTNVYVKN E SDE L +F ++G TS +M +G S+GFGFV
Sbjct: 211 KLQRDPSGEKVK-FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFV 269
Query: 188 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 367
FE+ D A RA LNGK + K +VG+AQKK+ER+ ELK+KFEQ E + QG N
Sbjct: 270 NFENSDDAARAVDALNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN 328
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
LYVKNLD+++ D++LR+ FAPFGTITS KVM
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVM 359
Score = 94.7 bits (225), Expect = 3e-20
Identities = 49/105 (46%), Positives = 69/105 (65%)
Frame = +2
Query: 20 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFED 199
KE +K++ +N+YVKN E +D+ L++ F +G ITS KVM G SRG GFVAF
Sbjct: 318 KEAADKSQ-GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFST 376
Query: 200 PDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 334
P+ A RA E+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 377 PEEATRAITEMNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 79.4 bits (187), Expect = 1e-15
Identities = 49/140 (35%), Positives = 74/140 (52%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
N+++KN + + L + F +G I S KV G S+G+GFV ++ +AA+ A +L
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG L+ K +YVG K +R E++K N+YVKNL +++ DE L
Sbjct: 194 NGM-LLNDKQVYVGPFVHKLQRDP----SGEKVKF--------TNVYVKNLSESLSDEEL 240
Query: 413 RKEFAPFGTITSAKVMLEDG 472
K F FG TS V++ DG
Sbjct: 241 NKVFGEFGVTTSC-VIMRDG 259
Score = 49.6 bits (113), Expect = 1e-06
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 226
T++YV + +D L + F + G++ S +V S G+G+V + P A RA
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV-NLYVKNLDDTIDD 403
ELN L G+ + V + R L++ GV N+++KNLD +ID
Sbjct: 105 ELNFMAL-NGRAIRV----MYSVRDPSLRK-------------SGVGNIFIKNLDKSIDH 146
Query: 404 ERLRKEFAPFGTITSAKVMLE 466
+ L + F+ FG I S KV ++
Sbjct: 147 KALHETFSAFGPILSCKVAVD 167
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 153 bits (371), Expect = 6e-38
Identities = 78/152 (51%), Positives = 103/152 (67%)
Frame = +2
Query: 5 RKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 184
R+ K K FTNVYVKN E +D+ LK+ F +YG+ITS VM +G S+GFGF
Sbjct: 15 RRQERDSTANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGF 73
Query: 185 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 364
V FE+ D A RA LNG + + K YVGRAQKK+ER+ EL+ ++EQ E ++Q
Sbjct: 74 VNFENADDAARAVESLNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS 132
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
NLYVKNLD +I DE+L++ F+PFGT+TS+KVM
Sbjct: 133 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVM 164
Score = 95.9 bits (228), Expect = 1e-20
Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Frame = +2
Query: 17 EKELGEKAKLF--TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVA 190
E+ L E A F +N+YVKN SDE LK++F +G +TS KVM +G S+G GFVA
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 178
Query: 191 FEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 334
F P+ A A +L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 179 FATPEEATEAMSQLSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 152 bits (368), Expect = 1e-37
Identities = 76/153 (49%), Positives = 104/153 (67%)
Frame = +2
Query: 5 RKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 184
R+ R + FTNVYVKN ++ +D+ LK F KYG I+S VM GNSR FGF
Sbjct: 210 RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGF 269
Query: 185 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 364
V F P+AA A ++NG L E LYVGRAQKK++R++EL+RKFEQ + R + QG
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERISRFEKLQGS 328
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 463
NLY+KNLDD+++DE+L++ F+ +G +TS KVM+
Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMM 361
Score = 102 bits (244), Expect = 1e-22
Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Frame = +2
Query: 5 RKXREKELGEKAKLF-TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFG 181
RK ++ + KL +N+Y+KN + +DE LK+MF +YG +TS KVM G SRGFG
Sbjct: 312 RKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFG 371
Query: 182 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 337
FVA+ +P+ A A E+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 372 FVAYSNPEEALLAMKEMNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
Score = 77.8 bits (183), Expect = 4e-15
Identities = 48/136 (35%), Positives = 71/136 (52%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
NV++KN ++ L + F +G I S KV G S+G+GFV FE + A+ A +L
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG L+ K ++VG ++ +R +SE N+YVKNL I D+ L
Sbjct: 193 NGM-LLNDKQVFVGHFVRRQDR----------ARSESGAVPSFTNVYVKNLPKEITDDEL 241
Query: 413 RKEFAPFGTITSAKVM 460
+K F +G I+SA VM
Sbjct: 242 KKTFGKYGDISSAVVM 257
Score = 47.6 bits (108), Expect = 4e-06
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+++YV + ++ L D+F + + + +V S G+ +V F +P+ A RA
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV-NLYVKNLDDTIDDE 406
LN + +P+ + + + TR G N+++KNLD +ID++
Sbjct: 105 LNYAP-IRDRPIRIMLSNRDPS-----------------TRLSGKGNVFIKNLDASIDNK 146
Query: 407 RLRKEFAPFGTITSAKVMLE 466
L + F+ FGTI S KV ++
Sbjct: 147 ALYETFSSFGTILSCKVAMD 166
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 149 bits (362), Expect = 7e-37
Identities = 75/153 (49%), Positives = 105/153 (68%)
Frame = +2
Query: 5 RKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 184
R+ R ++ FTNVYVKN ++ ++ L+ F K+G I+S VM GNSR FGF
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGF 273
Query: 185 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 364
V FE +AA A ++NG L + LYVGRAQKK+ER++EL+RKFEQ + R + QG
Sbjct: 274 VNFECTEAAASAVEKMNGISLGDDV-LYVGRAQKKSEREEELRRKFEQERINRFEKSQGA 332
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 463
NLY+KNLDD++DDE+L++ F+ +G +TS+KVML
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVML 365
Score = 99.5 bits (237), Expect = 1e-21
Identities = 45/95 (47%), Positives = 65/95 (68%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
N+Y+KN + DE LK+MF +YG +TS KVM G SRGFGFVA+ +P+ A RA E+
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEM 392
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 337
NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 393 NGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
Score = 84.6 bits (200), Expect = 3e-17
Identities = 50/136 (36%), Positives = 75/136 (55%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
N+++KN ++ L + F +G I S KV G S+G+GFV FE ++A+ A +L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG L+ K ++VG ++ ER ++ E + R T N+YVKNL I ++ L
Sbjct: 197 NGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT-----NVYVKNLPKEIGEDEL 245
Query: 413 RKEFAPFGTITSAKVM 460
RK F FG I+SA VM
Sbjct: 246 RKTFGKFGVISSAVVM 261
Score = 49.2 bits (112), Expect = 1e-06
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+++Y + ++ L D+F+ + S +V + S G+ ++ F +P+ A RA
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV-NLYVKNLDDTIDDE 406
LN L + +P+ + + + TR G N+++KNLD +ID++
Sbjct: 109 LNYTPLFD-RPIRIMLSNRDPS-----------------TRLSGKGNIFIKNLDASIDNK 150
Query: 407 RLRKEFAPFGTITSAKVMLE 466
L + F+ FGTI S KV ++
Sbjct: 151 ALFETFSSFGTILSCKVAMD 170
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 137 bits (331), Expect = 4e-33
Identities = 73/145 (50%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Frame = +2
Query: 32 EKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAA 211
+K+++FTNVYVKN E +D LK +F ++G ITS VM +G SR FGFV FE +AA
Sbjct: 113 DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAA 172
Query: 212 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER-LTRYQGVNLYVKNLD 388
A ++NG +V+ K L+VGRAQ+K R ++LK KFE K R + +G+NLYVKNLD
Sbjct: 173 VTAIEKMNG-VVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLD 231
Query: 389 DTIDDERLRKEFAPFGTITSAKVML 463
D++D+ +L + F+ FGTITS KVM+
Sbjct: 232 DSVDNTKLEELFSEFGTITSCKVMV 256
Score = 76.2 bits (179), Expect = 1e-14
Identities = 37/96 (38%), Positives = 59/96 (61%)
Frame = +2
Query: 35 KAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAE 214
K + N+YVKN + + L+++F ++G ITS KVM +G S+G GFV F + A
Sbjct: 218 KTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEAS 277
Query: 215 RACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 322
+A +++NGK +V KP+YV AQ K + + L+ +F
Sbjct: 278 KAMLKMNGK-MVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 68.1 bits (159), Expect = 3e-12
Identities = 49/140 (35%), Positives = 71/140 (50%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
NV+VKN E ++ L DMF +G++ S KV G S+G+GFV F + AC
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG L+ + ++V + + K R F N+YVKNL +T D L
Sbjct: 92 NG-TLIRNQHIHVCPFVSRGQWDK--SRVF-------------TNVYVKNLVETATDADL 135
Query: 413 RKEFAPFGTITSAKVMLEDG 472
++ F FG ITSA V+++DG
Sbjct: 136 KRLFGEFGEITSA-VVMKDG 154
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 116 bits (280), Expect = 6e-27
Identities = 56/141 (39%), Positives = 93/141 (65%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
+TN+Y+KN D S+++L++ F ++G+I S + ++ RG+ FV F++P+ A RA
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 406
+NG + K LYVGRAQKKAER++ L+ +F++ E+ + N+YVKN++ + +E
Sbjct: 260 TVNGTKF-GSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 407 RLRKEFAPFGTITSAKVMLED 469
LRK F+ GTITS K+M ++
Sbjct: 319 ELRKHFSQCGTITSTKLMCDE 339
Score = 99 bits (238), Expect = 8e-22
Identities = 58/139 (41%), Positives = 81/139 (58%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
NV+VKN E ++ +L+DMF+K+G I S KV +DG SRG+GFV FE DAA A L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
N +V K +YVG+ KK +R K E+ T NLY+KNLD + ++ L
Sbjct: 173 N-STIVADKEIYVGKFMKKTDRVK---------PEEKYT-----NLYMKNLDADVSEDLL 217
Query: 413 RKEFAPFGTITSAKVMLED 469
R++FA FG I S + ++
Sbjct: 218 REKFAEFGKIVSLAIAKDE 236
Score = 78.2 bits (184), Expect = 3e-15
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Frame = +2
Query: 20 KELGEKAKLF---TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVA 190
KE E+ K+ +N+YVKN ++E L+ F + G ITS K+M + G S+GFGFV
Sbjct: 291 KEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVC 350
Query: 191 FEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 322
F P+ A A +G ++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 351 FSTPEEAIDAVKTFHG-QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 109 bits (262), Expect = 9e-25
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
TNVYVKN E +D+ L +F +YG ++S VM G SRGFGFV F +P+ A++A
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVKNLDDTIDDE 406
L G +L K L+VG+A KK ER++ LK+KF + ++ R+ NLYVKNL +++++
Sbjct: 262 LCGLQL-GSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS--NLYVKNLSESMNET 318
Query: 407 RLRKEFAPFGTITSAKVMLED 469
RLR+ F +G I SAKVM +
Sbjct: 319 RLREIFGCYGQIVSAKVMCHE 339
Score = 79.8 bits (188), Expect = 9e-16
Identities = 39/93 (41%), Positives = 64/93 (68%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
++N+YVKN E ++ L+++F YG+I S KVM ++G S+GFGFV F + + +++A
Sbjct: 303 WSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKR 362
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 325
LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 363 YLNG-FLVDGKPIVVRVAERKEDRIKRLQQYFQ 394
Score = 76.6 bits (180), Expect = 8e-15
Identities = 50/142 (35%), Positives = 76/142 (53%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
F N+YVKN + L+ MF +G I S KV+ +++G S+GFGFV F+ +A A
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARS 169
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 406
L+G +V GK L+V + K ER + N+YVKNL +T+ D+
Sbjct: 170 ALHG-SMVYGKKLFVAKFINKDER------------AAMAGNQDSTNVYVKNLIETVTDD 216
Query: 407 RLRKEFAPFGTITSAKVMLEDG 472
L F+ +GT++S V++ DG
Sbjct: 217 CLHTLFSQYGTVSSV-VVMRDG 237
Score = 60.5 bits (140), Expect = 6e-10
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERAC 223
F ++YV + D +++ L D F + S H G S + ++ F+ P +A A
Sbjct: 20 FGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAM 79
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 403
LN +L +GK + + +Q+ L R TR NLYVKNLD +I
Sbjct: 80 TRLNHSDL-KGKAMRIMWSQR-------------DLAYRRRTRTGFANLYVKNLDSSITS 125
Query: 404 ERLRKEFAPFGTITSAKVMLEDG 472
L + F PFG+I S KV+ E+G
Sbjct: 126 SCLERMFCPFGSILSCKVVEENG 148
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 66.1 bits (154), Expect = 1e-11
Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 226
+++V + D SD +L + F EKY + + KV+ + G S+G+GFV F D + +A
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG----VNLYVKNLDDT 394
E+NG + + + +G A + + +++ + S TR +G ++V LD +
Sbjct: 260 EMNGVK-CSSRAMRIGPATPR--KTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSS 316
Query: 395 IDDERLRKEFAPFGTITSAKVMLEDG 472
+ DE L++ F+ FG I S K+ + G
Sbjct: 317 VTDEDLKQPFSEFGEIVSVKIPVGKG 342
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T ++V +DE LK F ++G I S K+ +G GFV F + AE A +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEK 360
Query: 230 LNG 238
LNG
Sbjct: 361 LNG 363
Score = 35.5 bits (78), Expect = 0.019
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 128 ITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNG 238
I S KV+ K +G+S G+GFV FE D A++ E NG
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 65.3 bits (152), Expect = 2e-11
Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 226
+++V + D SD +L + F EKY + + KV+ + G S+G+GFV F D + +A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG----VNLYVKNLDDT 394
E+NG + + + +G A + + +++ + + LTR +G ++V LD +
Sbjct: 258 EMNGVK-CSSRAMRIGPATPR--KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSS 314
Query: 395 IDDERLRKEFAPFGTITSAKVMLEDG 472
+ DE L++ F FG I S K+ + G
Sbjct: 315 VTDEDLKQPFNEFGEIVSVKIPVGKG 340
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T ++V +DE LK F ++G I S K+ +G GFV F + AE A +
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEK 358
Query: 230 LNG 238
LNG
Sbjct: 359 LNG 361
Score = 35.1 bits (77), Expect = 0.024
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = +2
Query: 128 ITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 304
I S KV+ K++G S G+GFV FE D A++ E NG + + + +K
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEK 188
Query: 305 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA-PFGTITSAKVMLE 466
L+ L +++V +L + D L + F+ + ++ +AKV+L+
Sbjct: 189 RLENNGPDL-----------SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLD 232
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 62.1 bits (144), Expect = 2e-10
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Frame = +2
Query: 32 EKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDA 208
E+AKLF V N D + L +FE+ G + +V+Y +D SRGFGFV +
Sbjct: 111 EEAKLF----VGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 209 AERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 388
AE+A + N E V G+ L V RA + R + R ++ +YV NL
Sbjct: 167 AEKAVEKFNSFE-VNGRRLTVNRAAPRGSRPERQPRVYD----------AAFRIYVGNLP 215
Query: 389 DTIDDERLRKEFAPFGTITSAKVM 460
+D RL + F+ G + A+V+
Sbjct: 216 WDVDSGRLERLFSEHGKVVDARVV 239
Score = 47.2 bits (107), Expect = 6e-06
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+YV N D L+ +F ++G++ +V+ ++ G SRGFGFV + + A L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 233 NGKELVEGKPLYVGRAQKKAER 298
+G+ L EG+ + V A+++ R
Sbjct: 269 DGQNL-EGRAIKVNVAEERTRR 289
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 61.3 bits (142), Expect = 3e-10
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Frame = +2
Query: 23 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFED 199
E E+AKLF V N D + + L +FE+ G + +V+Y ++ SRGFGFV
Sbjct: 145 EPSEEAKLF----VGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 200 PDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 379
D AE A + N +L G+ L V +A + R + R +E +YV
Sbjct: 201 VDEAETAVEKFNRYDL-NGRLLTVNKAAPRGSRPERAPRVYE----------PAFRVYVG 249
Query: 380 NLDDTIDDERLRKEFAPFGTITSAKVMLE 466
NL +D+ RL + F+ G + A+V+ +
Sbjct: 250 NLPWDVDNGRLEQLFSEHGKVVEARVVYD 278
Score = 56.8 bits (131), Expect = 7e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGF 178
PR R + + VYV N D + L+ +F ++G++ +V+Y ++ G SRGF
Sbjct: 228 PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287
Query: 179 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 301
GFV D D A L+G+ L EG+ + V A+++ R+
Sbjct: 288 GFVTMSDVDELNEAISALDGQNL-EGRAIRVNVAEERPPRR 327
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 60.1 bits (139), Expect = 8e-10
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ D +E L+D F YG + +M + G +RGFGF+ F DP +ER ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 403
K +++G+ + +A + + Q+ LKR + G ++V L +I +
Sbjct: 67 --KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 404 ERLRKEFAPFGTITSAKVMLE 466
E + F FGTI VM +
Sbjct: 124 EEFKNYFDQFGTIADVVVMYD 144
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERAC--- 223
++V ++E K+ F+++G I VMY + RGFGF+ F+ DA +R
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 224 -IELNGKELVEGK 259
ELNGK LVE K
Sbjct: 172 FHELNGK-LVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 60.1 bits (139), Expect = 8e-10
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ D +E L+D F YG + +M + G +RGFGF+ F DP +ER ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 403
K +++G+ + +A + + Q+ LKR + G ++V L +I +
Sbjct: 67 --KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 404 ERLRKEFAPFGTITSAKVMLE 466
E + F FGTI VM +
Sbjct: 124 EEFKNYFDQFGTIADVVVMYD 144
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERAC--- 223
++V ++E K+ F+++G I VMY + RGFGF+ F+ DA +R
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 224 -IELNGKELVEGK 259
ELNGK LVE K
Sbjct: 172 FHELNGK-LVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 60.1 bits (139), Expect = 8e-10
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ D +E L+D F YG + +M + G +RGFGF+ F DP +ER ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 403
K +++G+ + +A + + Q+ LKR + G ++V L +I +
Sbjct: 67 --KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 404 ERLRKEFAPFGTITSAKVMLE 466
E + F FGTI VM +
Sbjct: 124 EEFKNYFDQFGTIADVVVMYD 144
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERAC--- 223
++V ++E K+ F+++G I VMY + RGFGF+ F+ DA +R
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 224 -IELNGKELVEGK 259
ELNGK LVE K
Sbjct: 172 FHELNGK-LVEVK 183
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 59.7 bits (138), Expect = 1e-09
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
++V + + +D ML D F+ YG + KV+ + G S+G+GFV F D + RA E
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 230 LNGKELVEGKPLYVG-RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 406
+NG + +P+ +G A K A + + Q + ++V LD + D+
Sbjct: 216 MNG-QYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 407 RLRKEFAPFGTITSAKV 457
L+ F FG + K+
Sbjct: 275 ELKSIFGQFGELLHVKI 291
Score = 33.5 bits (73), Expect = 0.075
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
++++ + + + + +F + G TS KV+ K G S G+GF+ F AER
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 230 LNG 238
NG
Sbjct: 121 YNG 123
Score = 31.5 bits (68), Expect = 0.30
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T ++V + +D+ LK +F ++G + K+ + GFV + + +AE A
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSV 314
Query: 230 LNGKEL-VEGKPLYVGRAQKKAERQKE 307
LNG +L + L GR+ K Q +
Sbjct: 315 LNGTQLGGQSIRLSWGRSPNKQSDQAQ 341
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 58.8 bits (136), Expect = 2e-09
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Frame = +2
Query: 17 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAF 193
E++ E A +++ D +E L++ F KYG + +M + G +RGFGF+ F
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 194 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN-- 367
DP AER ++ K +++G+ + +A + + Q+ LKR + ++ G N
Sbjct: 64 ADPSVAERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKRHASPM--HLISPSHGGNGG 117
Query: 368 ------LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
++V L +I + + F FGTI VM +
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYD 156
Score = 36.3 bits (80), Expect = 0.011
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAE----RA 220
++V ++ K+ F+++G I VMY + RGFGF+ F+ ++ + +
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 221 CIELNGKELVEGK 259
ELNGK +VE K
Sbjct: 184 FHELNGK-MVEVK 195
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 58.4 bits (135), Expect = 2e-09
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V + ++ L++ F YG ++ VM K G RGFGFV F DP +R L
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV---L 64
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN----LYVKNLDDTID 400
K ++ + + V RA + E+Q + + L + R + N ++V L T+
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQ--VSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 401 DERLRKEFAPFGTITSAKVMLE 466
DE R+ F +G +T +M +
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYD 144
Score = 43.6 bits (98), Expect = 7e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACIEL 232
++V +DE + FE YG +T +MY N RGFGFV+F+ DA + + +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVD-SVLHK 170
Query: 233 NGKELVEGKPLYVGRAQKK 289
+L GK + V RA K
Sbjct: 171 TFHDL-SGKQVEVKRALPK 188
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 58.0 bits (134), Expect = 3e-09
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC 223
FT++Y+ N S+EML MF +G++ V+ KD G SRGF F+ FE D+A RA
Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKVI-RSVLAKDFRGESRGFAFIEFESADSAGRAM 74
Query: 224 IELNGKELVEGKPLYVGRAQK 286
+ ++G+ L+ K L V R K
Sbjct: 75 LHMDGR-LIGQKILCVQRTPK 94
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 58.0 bits (134), Expect = 3e-09
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
VY+ N ++E L + E++G + +VMY K G SR FGF + + A +L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDTIDDER 409
NG VEG+ + V +K +L L+SE +YV NL T+ E
Sbjct: 138 NGNT-VEGREIKVNITEKPIASSPDLS----VLQSEDSAFVDSPYKVYVGNLAKTVTKEM 192
Query: 410 LRKEFAPFGTITSAKV 457
L F+ G + SAKV
Sbjct: 193 LENLFSEKGKVVSAKV 208
Score = 51.2 bits (117), Expect = 3e-07
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIEL 232
VYV N + + EML+++F + G++ S KV S GFGFV F + E A + L
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 233 NGKELVEGKPLYVGRA 280
N L+EG+ + V +A
Sbjct: 239 N-NSLLEGQKIRVNKA 253
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 58.0 bits (134), Expect = 3e-09
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
SD L+D FEKYG + KV+ K G SRGFGF+ F++ A + A +NG +L +G+
Sbjct: 19 SDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL-DGRT 77
Query: 263 LYVGRAQ 283
+ V +AQ
Sbjct: 78 ITVDKAQ 84
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 56.8 bits (131), Expect = 7e-09
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ + S++ L+D F +G + +M + G +RGFGFV F DP+ AER +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL- 66
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
K +++GK + A+K R + K ++V L ++ +
Sbjct: 67 --KHIIDGK---IVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 410 LRKEFAPFGTITSAKVMLE 466
+K FA FG IT VM +
Sbjct: 122 FKKYFAQFGMITDVVVMYD 140
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC--- 223
++V ++ K F ++G IT VMY RGFGF++++ +A ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 224 -IELNGKELVEGK 259
ELNGK +VE K
Sbjct: 168 FHELNGK-MVEVK 179
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 56.8 bits (131), Expect = 7e-09
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ + S++ L+D F +G + +M + G +RGFGFV F DP+ AER +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL- 66
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
K +++GK + A+K R + K ++V L ++ +
Sbjct: 67 --KHIIDGK---IVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 410 LRKEFAPFGTITSAKVMLE 466
+K FA FG IT VM +
Sbjct: 122 FKKYFAQFGMITDVVVMYD 140
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC--- 223
++V ++ K F ++G IT VMY RGFGF++++ +A ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 224 -IELNGKELVEGK 259
ELNGK +VE K
Sbjct: 168 FHELNGK-MVEVK 179
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 56.8 bits (131), Expect = 7e-09
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
FT V+V + E L+ FE+YG I V+ K+ G S+G+GFV F DP+AA RAC
Sbjct: 23 FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 224 IE 229
+
Sbjct: 83 AD 84
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.4 bits (130), Expect = 9e-09
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 20 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFE 196
K+ L + ++V D ++ L+ F++YG+IT ++M +D G RGFGF+ F
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 197 DPDAAERACIELNGKELVEGKPLYVGRAQKK 289
D A+ A ++G+EL K + V +A+ K
Sbjct: 62 DRRGADDAIKHMHGREL-GNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.4 bits (130), Expect = 9e-09
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 20 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFE 196
K+ L + ++V D ++ L+ F++YG+IT ++M +D G RGFGF+ F
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 197 DPDAAERACIELNGKELVEGKPLYVGRAQKK 289
D A+ A ++G+EL K + V +A+ K
Sbjct: 62 DRRGADDAIKHMHGREL-GNKVISVNKAEPK 91
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
FT V+V + E L+ F++YG I V+ K+ G S+G+GFV F DP+AA RAC
Sbjct: 23 FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 224 IE 229
++
Sbjct: 83 VD 84
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 55.2 bits (127), Expect = 2e-08
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 232
+YV N + L DMF+ +G + S +V G SRG G+V ++A+ A L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 403
+G E V G+ + R + + +R E L S +++ Y+ + +YV NL
Sbjct: 170 DGTE-VGGREM---RVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 225
Query: 404 ERLRKEFAPFGTITSAKVM 460
+ LR F+ FGTI S +V+
Sbjct: 226 DGLRNHFSKFGTIVSTRVL 244
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
VYV N + L++ F K+G I S +V++ + G +R F F++F + + A +
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERD-AALSF 272
Query: 233 NGKELVEGKPLYVGRAQKKAE 295
NG + EG+ + V +K+E
Sbjct: 273 NGTQ-YEGRRIIVREGIEKSE 292
Score = 31.5 bits (68), Expect = 0.30
Identities = 27/113 (23%), Positives = 51/113 (45%)
Frame = +2
Query: 119 YGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 298
Y + S K+ + +S F + P A+ I+++ EL L + ++ +
Sbjct: 33 YSYLESLKLQFS---SSNSFHHSSLSRPFVAQPLQIKVSSSEL---SVLDEEKEEEVVKG 86
Query: 299 QKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 457
+ E + K+E + + + LYV N+ + D +L F PFGT+ S +V
Sbjct: 87 EAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEV 139
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.8 bits (126), Expect = 3e-08
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NGKEL +G+
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRV 76
Query: 263 LYVGRAQKK 289
+ V AQ +
Sbjct: 77 ITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.8 bits (126), Expect = 3e-08
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NGKEL +G+
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRV 76
Query: 263 LYVGRAQKK 289
+ V AQ +
Sbjct: 77 ITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.8 bits (126), Expect = 3e-08
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NGKEL +G+
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRV 76
Query: 263 LYVGRAQKK 289
+ V AQ +
Sbjct: 77 ITVNEAQSR 85
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 54.8 bits (126), Expect = 3e-08
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V N + L +FE G + +V+Y K G SRGFGFV E A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY---------QGVNLYVKNL 385
NG EL +G+PL V +R+ R + Y G +YV NL
Sbjct: 153 NGYEL-DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 386 DDTIDDERLRKEFAPFGTITSAKVMLE 466
+DD L F+ G + A+V+ +
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYD 238
Score = 54.8 bits (126), Expect = 3e-08
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPD 205
G A VYV N D L+ +F + G++ +V+Y +D G S+GFGFV ++
Sbjct: 197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256
Query: 206 AAERACIELNGKELVEGKPLYVGRAQKKAERQK 304
+ A L+G +L +G+ + V A+ + R++
Sbjct: 257 EVQNAIKSLDGADL-DGRQIRVSEAEARPPRRQ 288
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 54.4 bits (125), Expect = 4e-08
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +2
Query: 26 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 202
LG + T +++ D L+D F +G + KV+ ++ G SRGFGFV F D
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKK 289
AA A E++GKEL G+ + V A +
Sbjct: 87 GAATAAISEMDGKEL-NGRHIRVNPANDR 114
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 54.4 bits (125), Expect = 4e-08
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +2
Query: 26 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 202
LG + T +++ D L+D F +G + KV+ ++ G SRGFGFV F D
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKK 289
AA A E++GKEL G+ + V A +
Sbjct: 87 GAATAAISEMDGKEL-NGRHIRVNPANDR 114
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.0 bits (124), Expect = 5e-08
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
VY N G + + + LKD F + KV+Y ++ G SRGFGF++FE + + A +
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 233 NGKELVEGKPLYVGRAQKK 289
NG E VEG+ L + A ++
Sbjct: 281 NGVE-VEGRALRLNLASER 298
Score = 36.3 bits (80), Expect = 0.011
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 2/152 (1%)
Frame = +2
Query: 17 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAF 193
EK+ + + +YV N + L +F + G + +++Y K SRGFGFV
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Query: 194 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN-L 370
+ A+ A N + + G+ + V + + E+ R +++ + + +
Sbjct: 165 GSIEEAKEAMQMFNSSQ-IGGRTVKVNFPEVPRGGENEVMR--TKIRDNNRSYVDSPHKV 221
Query: 371 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
Y NL + + L+ F + AKV+ E
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYE 253
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 53.6 bits (123), Expect = 7e-08
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
V+V + D +D ML + F+ Y + KV+ + G S+G+GFV F D RA E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
+NG + +P+ G A K + + + ++V +D ++ ++
Sbjct: 235 MNG-QYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 410 LRKEFAPFGTITSAKV 457
L+ F FG + K+
Sbjct: 294 LKSVFGQFGELVHVKI 309
Score = 31.5 bits (68), Expect = 0.30
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNG 238
+ L ++F G T+ KV+ K +G S G+GF+ F + AER NG
Sbjct: 93 ENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNG 143
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 208
GE T ++V + +++ LK +F ++G + K+ + GFV + +
Sbjct: 271 GESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA-----GKRCGFVQYANRAC 325
Query: 209 AERACIELNGKEL 247
AE+A LNG +L
Sbjct: 326 AEQALSVLNGTQL 338
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.6 bits (123), Expect = 7e-08
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+YV N D L+++F + G++ +V+Y +D G S+GFGFV ++A L
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 233 NGKELVEGKPLYVGRAQKKAER 298
NG +L +G+ + V A+ + R
Sbjct: 311 NGADL-DGRQIRVSEAEARPPR 331
Score = 49.6 bits (113), Expect = 1e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V N + L +FE G + +V+Y K G SRGFGFV E A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKR 316
NG E EG+PL V +R++ R
Sbjct: 161 NGYEF-EGRPLRVNAGPPPPKREESFSR 187
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.6 bits (123), Expect = 7e-08
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+YV N D L+++F + G++ +V+Y +D G S+GFGFV ++A L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 233 NGKELVEGKPLYVGRAQKKAER 298
NG +L +G+ + V A+ + R
Sbjct: 319 NGADL-DGRQIRVSEAEARPPR 339
Score = 49.6 bits (113), Expect = 1e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V N + L +FE G + +V+Y K G SRGFGFV E A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKR 316
NG E EG+PL V +R++ R
Sbjct: 161 NGYEF-EGRPLRVNAGPPPPKREESFSR 187
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 53.6 bits (123), Expect = 7e-08
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 26 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 202
LG + + ++V D LK F +G +T V+ ++ G SRGFGFV+F
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKKA 292
D+A A E++GKEL G+ + V A +++
Sbjct: 87 DSANNAIKEMDGKEL-NGRQIRVNLATERS 115
Score = 30.7 bits (66), Expect = 0.53
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 350 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
RY L+V L DD L++ F FG +T A V+ +
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIAD 69
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 53.6 bits (123), Expect = 7e-08
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 26 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 202
LG + + ++V D LK F +G +T V+ ++ G SRGFGFV+F
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKKA 292
D+A A E++GKEL G+ + V A +++
Sbjct: 87 DSANNAIKEMDGKEL-NGRQIRVNLATERS 115
Score = 30.7 bits (66), Expect = 0.53
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 350 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
RY L+V L DD L++ F FG +T A V+ +
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIAD 69
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
+ V++ D +E L+D+ E+ G I ++M +D G+S+G+ FVAF+ D A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 227 ELNGKELVEGKPLYVGRAQKK 289
EL+ KE +GK + ++ K
Sbjct: 176 ELHSKEF-KGKTIRCSLSETK 195
Score = 29.9 bits (64), Expect = 0.92
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS---RGFGFVAFED---PDAAER 217
+++ N ++++++ + + E G + + KD N+ RGF FV + + D + +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 218 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 397
I+ N K +EG V A K+ E Q+K+ LYVKN+ +
Sbjct: 258 KMIDSNFK--LEGNAPTVTWADPKSS--PEHSAAAAQVKA----------LYVKNIPENT 303
Query: 398 DDERLRKEFAPFGTIT 445
E+L++ F G +T
Sbjct: 304 STEQLKELFQRHGEVT 319
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 52.4 bits (120), Expect = 2e-07
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDPDAAERACIE 229
+++ D ++E LK+ F +G + V+ KD G +RGFGFV F DP AE I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIE-AVILKDRTTGRARGFGFVVFADPAVAE---IV 63
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
+ K ++G+ + +A + ++ + ++ + ++V L ++ +
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123
Query: 410 LRKEFAPFGTITSAKVMLE 466
+ F FGT T VM +
Sbjct: 124 FKTYFEQFGTTTDVVVMYD 142
Score = 39.9 bits (89), Expect = 9e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERACI-- 226
++V ++ K FE++G T VMY + RGFGF+ ++ +A E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 227 --ELNGKELVEGK 259
ELNGK +VE K
Sbjct: 170 FHELNGK-MVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 52.4 bits (120), Expect = 2e-07
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDPDAAERACIE 229
+++ D ++E LK+ F +G + V+ KD G +RGFGFV F DP AE I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIE-AVILKDRTTGRARGFGFVVFADPAVAE---IV 63
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 409
+ K ++G+ + +A + ++ + ++ + ++V L ++ +
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123
Query: 410 LRKEFAPFGTITSAKVMLE 466
+ F FGT T VM +
Sbjct: 124 FKTYFEQFGTTTDVVVMYD 142
Score = 39.9 bits (89), Expect = 9e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERACI-- 226
++V ++ K FE++G T VMY + RGFGF+ ++ +A E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 227 --ELNGKELVEGK 259
ELNGK +VE K
Sbjct: 170 FHELNGK-MVEVK 181
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 52.4 bits (120), Expect = 2e-07
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ D + +L++ F +G + VM K G RGFGFVAF DP +R L
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV---L 64
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKR-KFEQLKS-ERLTRYQGVNLYVKNLDDTIDDE 406
K ++ + + V RA + E+ + F ++ + + ++V L + +
Sbjct: 65 QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSD 124
Query: 407 RLRKEFAPFGTITSAKVMLE 466
R F +G ++ A +M++
Sbjct: 125 EFRAYFETYGPVSDAVIMID 144
Score = 33.1 bits (72), Expect = 0.099
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAE----RACIELNGKEL 247
SDE + FE YG ++ +M + RGFGFV+F+ D+ + + +LNGK++
Sbjct: 123 SDEF-RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
N+++ N +F D+ L F+ +G++ S KV K G S+ FGF++++ AA+ A
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRK 319
+NG +L GK L V + ++Q++ + K
Sbjct: 400 MNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 428
Score = 41.5 bits (93), Expect = 3e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 41 KLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
KLF + KN S+ ++ +F +YG I +++ S+G F+ +E + A A
Sbjct: 110 KLFVGMLPKNV----SETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAA 165
Query: 221 CIELNGKELVEGK--PLYVGRAQKKAERQ 301
LNG+ ++EG PL V A + ERQ
Sbjct: 166 MEALNGRHIMEGANVPLIVKWADTEKERQ 194
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 359 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
G NL++ N+ +D+ L F PFG + SAKV ++
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVD 373
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
N+++ N +F D+ L F+ +G++ S KV K G S+ FGF++++ AA+ A
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRK 319
+NG +L GK L V + ++Q++ + K
Sbjct: 391 MNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 419
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 208
GE +L ++V ++ S+ ++ +F +YG I +++ S+G F+ +E +
Sbjct: 93 GELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQ 152
Query: 209 AERACIELNGKELVEGK--PLYVGRAQKKAERQ 301
A A LNG+ ++EG PL V A + ERQ
Sbjct: 153 AVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 185
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 359 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
G NL++ N+ +D+ L F PFG + SAKV ++
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVD 364
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 52.0 bits (119), Expect = 2e-07
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 226
+V+V + D +D +L + F ++Y + S KV+ + G S+G+GFV F D + RA
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL--------------KSERLTRYQGV 364
E+NG + + VG A K + + + + S+
Sbjct: 263 EMNG-AYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNA 321
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
++V +D + DE LR+ F+ FG + S K+ + G
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG 357
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V D DE L+ F ++G + S K+ +G GFV F D +AE A LN
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV-----GKGCGFVQFADRKSAEDAIESLN 377
Query: 236 G 238
G
Sbjct: 378 G 378
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSH-KVMYKDD-GNSRGFGFVAFEDPDAAERACI 226
N+++ N D +++L D F +G I S+ K+M D GNSRGFGF++++ +A++ A
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 227 ELNGKELVEGKPLYVGRAQKK 289
+ G+ L + + V A KK
Sbjct: 173 SMTGQYL-SNRQITVSYAYKK 192
Score = 44.4 bits (100), Expect = 4e-05
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACIEL 232
VYV S+E+L ++F + G + + V N + +GF+ + + A+ A L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
N +L GKP+ R K ++ +K L G NL++ NLD +D++ L
Sbjct: 87 NMIKL-HGKPI---RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLL 128
Query: 413 RKEFAPFGTITSAKVMLED 469
F+ FG I S ++ D
Sbjct: 129 YDTFSAFGVIASNPKIMRD 147
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 59 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELN 235
+V+ +D ++ L D+F K+G + K++Y +D G SR FGFV FE+ + A + ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 236 GKELVEGKPLYVGRAQKKAERQKELKRKFE 325
+E K + VG + RQ+ R E
Sbjct: 70 VEE-SRSKCVNVGSITVEVARQRRKNRSAE 98
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 51.6 bits (118), Expect = 3e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
FT V+V + L++ FE++G I V+ K G S+G+GFV F DP+AA++AC
Sbjct: 6 FTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
Query: 224 IE 229
++
Sbjct: 66 VD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 51.6 bits (118), Expect = 3e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
FT V+V + L++ FE++G I V+ K G S+G+GFV F DP+AA++AC
Sbjct: 6 FTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
Query: 224 IE 229
++
Sbjct: 66 VD 67
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 26 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 202
LG + T +Y+ + LKD F + +T +VM K G SRG+GFV F
Sbjct: 23 LGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISE 82
Query: 203 DAAERACIELNGKEL 247
D+A A +NG+EL
Sbjct: 83 DSANSAISAMNGQEL 97
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 350 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
RY LY+ L D+ L+ F+ F +T A+VM
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVM 63
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
T VYV N +D+ML++ F YG + VM + SRGFGFV + AE A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 227 ELNGKEL 247
++GKEL
Sbjct: 63 GMDGKEL 69
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 50.4 bits (115), Expect = 6e-07
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 38 AKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAE 214
AK + ++V + +D L+ F ++G I ++M +D G SRGFGF+ F D A +
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 215 RACIELNGKELVEGKPLYVGRAQKKAER 298
+ E++G++ + + + V RA+ K R
Sbjct: 63 ESIREMHGRDFGD-RVISVNRAEPKLGR 89
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 50.4 bits (115), Expect = 6e-07
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
++V + D +D +L + F Y + KV+ + G ++G+GFV F D RA E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTID 400
+NG +P+ +G A K + +R Q + +T N ++V LD ++
Sbjct: 217 MNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 401 DERLRKEFAPFGTITSAKV 457
D+ L+ F+ +G I K+
Sbjct: 274 DDHLKNVFSQYGEIVHVKI 292
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T V+V +D+ LK++F +YG I K+ + GFV F + AE A
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA-----GKRCGFVQFSEKSCAEEALRM 315
Query: 230 LNGKEL 247
LNG +L
Sbjct: 316 LNGVQL 321
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELN 235
+ L F G + S KV+ K G G+GF+ F AAER N
Sbjct: 75 ENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFN 124
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 50.4 bits (115), Expect = 6e-07
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
++V + D +D +L + F Y + KV+ + G ++G+GFV F D RA E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTID 400
+NG +P+ +G A K + +R Q + +T N ++V LD ++
Sbjct: 217 MNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 401 DERLRKEFAPFGTITSAKV 457
D+ L+ F+ +G I K+
Sbjct: 274 DDHLKNVFSQYGEIVHVKI 292
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELN 235
+ L F G + S KV+ K G G+GF+ F AAER N
Sbjct: 75 ENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFN 124
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 50.0 bits (114), Expect = 8e-07
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERA 220
N++V+ FG D + E LK FE YG I VM KD G +G+GFV F+ A A
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERA 220
N++V+ G D + E LK FE YG IT VM KD G ++GFGFV F+ A A
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 265
D L+ F +YG + K++ ++ G SRGFGFV F+D A + A +NG++L +G+ +
Sbjct: 21 DRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDL-DGRSI 79
Query: 266 YVGRAQKK 289
V AQ +
Sbjct: 80 TVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 265
D L+ F +YG + K++ ++ G SRGFGFV F+D A + A +NG++L +G+ +
Sbjct: 21 DRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDL-DGRSI 79
Query: 266 YVGRAQKK 289
V AQ +
Sbjct: 80 TVNEAQSR 87
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 49.6 bits (113), Expect = 1e-06
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V ++ S+E LK F +YG + V K G RGFGFV F + +A L
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA---L 64
Query: 233 NGKELVEGKPLYVGRAQKKAERQKE------LKRKFEQLKSE-RLTRYQGV-----NLYV 376
+ GKP+ V +A +K E ++ L+RK +Q+ R GV ++V
Sbjct: 65 RDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 377 KNLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
L +E + F FG T V++ DG
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDV-VVMHDG 155
Score = 41.5 bits (93), Expect = 3e-04
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACIEL 232
++V + ++E K FE++GR T VM+ N RGFGFV ++ D+ E ++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE-VVMQS 180
Query: 233 NGKELVEGKPLYVGRAQKK 289
N EL + K + V RA K
Sbjct: 181 NFHELSD-KRVEVKRAIPK 198
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
+ +++ ++ L++ F KYG + +V+ ++ G SRGFGFV F +AA A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 227 ELNGKELVEGKPLYVGRAQKK 289
L+G++L G+ + V A +
Sbjct: 100 ALDGRDL-HGRVVKVNYANDR 119
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/136 (27%), Positives = 66/136 (48%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VYV N ++ +L+++F G + S K++ KD + +GFV + D +A A + L
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS---YGFVHYFDRRSAALAILSL 116
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG+ L G+P+ V A +R E S N++V +L + D L
Sbjct: 117 NGRHLF-GQPIKVNWAYATGQR--------EDTSSH-------FNIFVGDLSPEVTDATL 160
Query: 413 RKEFAPFGTITSAKVM 460
+ F+ F + + A+VM
Sbjct: 161 YQSFSVFSSCSDARVM 176
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
N++V + + +D L F + + +VM+ + G SRGFGFV+F + A+ A E
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 230 LNGKEL 247
+NGK L
Sbjct: 205 MNGKWL 210
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ +D ++ + F KYG IT +M + G RGFGF+ F DP ++ +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV---I 77
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
++ GK + + R K + K +K+++ ++V + T+ ++ L
Sbjct: 78 EDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTKK--------IFVGGIPSTVTEDEL 125
Query: 413 RKEFAPFGTITSAKVM 460
+ FA +G + +V+
Sbjct: 126 KDFFAKYGNVVEHQVI 141
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACIEL 232
++V +++ LKD F KYG + H+V+ + N SRGFGFV F+ + + +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKR 316
N ++ + + KKAE +K L R
Sbjct: 171 NMIDMADTQV-----EIKKAEPKKSLNR 193
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
+++ +D ++ + F KYG IT +M + G RGFGF+ F DP ++ +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV---I 77
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
++ GK + + R K + K +K+++ ++V + T+ ++ L
Sbjct: 78 EDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTKK--------IFVGGIPSTVTEDEL 125
Query: 413 RKEFAPFGTITSAKVM 460
+ FA +G + +V+
Sbjct: 126 KDFFAKYGNVVEHQVI 141
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAE 214
++V +++ LKD F KYG + H+V+ + N SRGFGFV F+ + +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V ++E L+D F +G++ +V+ +D G S+GFGFV + + AE+A E+
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 233 NGKELVEGKPLYVGRAQKKAERQ 301
N K ++G ++V A+ + R+
Sbjct: 96 NAK-FLDGWVIFVDPARPREPRR 117
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 48.8 bits (111), Expect = 2e-06
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 226
+++V + D SD +L + F +Y + KV+ + G S+G+GFV F D + RA
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK-------SERLTRYQGVN--LYVK 379
E+NG + + VG A K + + L + ++ + N ++V
Sbjct: 274 EMNG-AFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVG 332
Query: 380 NLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
LD + +E L + F+ FG + S K+ + G
Sbjct: 333 GLDADVTEEDLMQPFSDFGEVVSVKIPVGKG 363
Score = 33.1 bits (72), Expect = 0.099
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+ ++V D ++E L F +G + S K+ +G GFV F + +AE A
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEEAIGN 381
Query: 230 LNG 238
LNG
Sbjct: 382 LNG 384
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 98 LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNG 238
L F ++S KV+ K S G+GFV F AAE A +G
Sbjct: 135 LHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSG 182
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 48.4 bits (110), Expect = 2e-06
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
+ +++ ++ LKD F +G + ++ Y K G SRGFGFV F + A A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 343
++GK L+ G+PL + A ++ + + + K ER
Sbjct: 101 AMDGKGLL-GRPLRISFALERVRGGPVVVPRLGKSKRER 138
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 48.4 bits (110), Expect = 2e-06
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++DP + AC L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 233 NGKELVEGKPLYVGRA-----QKKAERQKELKRKFEQLKSERL 346
NG ++ + K L V RA Q K E+++ L +Q+ +RL
Sbjct: 437 NGIKMGD-KTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRL 478
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 48.0 bits (109), Expect = 3e-06
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
N++V + + +D L D F + + +VM+ + G SRGFGFV+F + A+ A E
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 230 LNGK 241
+NGK
Sbjct: 209 MNGK 212
Score = 44.0 bits (99), Expect = 5e-05
Identities = 37/136 (27%), Positives = 63/136 (46%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VY N ++ +L+++F G I S K++ KD + +GFV + D A A + L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG+ + G+P+ V A +R E S N++V +L + D L
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQR--------EDTSSH-------FNIFVGDLSPEVTDAAL 164
Query: 413 RKEFAPFGTITSAKVM 460
F+ F + + A+VM
Sbjct: 165 FDSFSAFNSCSDARVM 180
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 47.6 bits (108), Expect = 4e-06
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
+++ L + F K G++ + VM + S+GFGFV F D A++A +E NG++L G+
Sbjct: 46 TEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL-NGRT 104
Query: 263 LYVGRAQKK 289
++V A+ K
Sbjct: 105 IFVDYAKAK 113
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 47.6 bits (108), Expect = 4e-06
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
N+++ N +F D+ L F+ +G + S KV K G S+ FGFV+++ AA+ A
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 230 LNGKELVEGKPLYV 271
+NG+ L GK L V
Sbjct: 410 MNGRHL-GGKKLKV 422
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 208
GE +L ++V ++ S+ ++ +F KYG I +++ S+G F+ +E +
Sbjct: 99 GELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQ 158
Query: 209 AERACIELNGKELVEGK--PLYVGRAQKKAERQKELKRK 319
A A +NGK +EG PL V A + ER +K
Sbjct: 159 AVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 356 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
+G NL++ N+ D+ L F FG + SAKV ++
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVD 383
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
+T V+V + E +K FE++G I V+ K G S+G+GFV F + +AA AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQK 304
++ +++G+ A +R K
Sbjct: 72 VD--ATPVIDGRRANCNLASLGLQRSK 96
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
+T V+V + E +K FE++G I V+ K G S+G+GFV F + +AA AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQK 304
++ +++G+ A +R K
Sbjct: 72 VD--ATPVIDGRRANCNLASLGLQRSK 96
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
+T V+V + E +K FE++G I V+ K G S+G+GFV F + +AA AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQK 304
++ +++G+ A +R K
Sbjct: 72 VD--ATPVIDGRRANCNLASLGLQRSK 96
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 47.6 bits (108), Expect = 4e-06
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGF 178
PR ++ ++ +K ++V ++ LK+ F YG I H++MY G SRGF
Sbjct: 142 PRGDKDTDIKAVSKT-RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGF 200
Query: 179 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 289
GFV F+ D+ +R + EL + K + + RA+ K
Sbjct: 201 GFVTFQTEDSVDRLFSDGKVHELGD-KQVEIKRAEPK 236
Score = 41.5 bits (93), Expect = 3e-04
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V + + E + F K+G + +M + GN RGFGFV F D AE+ L
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV---L 124
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
+++ + + + R + ++ ++K + K ++V L ++++ L
Sbjct: 125 EEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRK-----------IFVGGLPPLLEEDEL 173
Query: 413 RKEFAPFGTITSAKVMLE 466
+ F +G I ++M +
Sbjct: 174 KNYFCVYGDIIEHQIMYD 191
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +2
Query: 20 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFE 196
+E ++++VK F + S+ LK +F ++G++T+ K++ + S G+G+V F
Sbjct: 67 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126
Query: 197 DPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 304
+ A+ A +NGK +G+ + V Q R++
Sbjct: 127 SKEDAQSAVEAMNGK-FFDGRFILVKFGQPGLSRRR 161
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/100 (28%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACI 226
N++V N + + LK+ F+ G + S +V++ ++ S G+GFV+F+ AE A I
Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI 249
Query: 227 ELNGKELVEGKPLYVGRAQK--KAERQKELKRKFEQLKSE 340
E GK+ + G+P+ + ++++ K + ++ L+ E+ + E
Sbjct: 250 EFQGKDFL-GRPIRLAKSKQFVKLQAKEGLQPPEEEAEEE 288
Score = 37.5 bits (83), Expect = 0.005
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACI 226
T + +N + E ++ +FEKYG + ++ M+K + N RG F+ P+ A A
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERN-RGLVFIEMASPEEAATALK 152
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 406
L E EG+ L V A + K+K E + NL+V NL +
Sbjct: 153 SLESCE-YEGRRLKVDYA--------KTKKKKTYAPRETPSPVPTFNLFVANLAFEARAK 203
Query: 407 RLRKEF-APFGTITSAKVMLED 469
L++ F A G + S +V+ +
Sbjct: 204 HLKEFFDADTGNVVSTEVIFHE 225
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.4 bits (105), Expect = 1e-05
Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++ N + +++ F++ G + ++ DDG+ +G+G + F P+ A++A +E+N
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKA-LEMN 444
Query: 236 GKELVEGKPLYVGRAQKK-AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
GK L+ G+ + + A ++ R RK E +S +YV+ ++ ++ +
Sbjct: 445 GK-LLLGRDVRLDLANERGTPRNSNPGRKGEGSQSR--------TIYVRGFSSSLGEDEI 495
Query: 413 RKE----FAPFGTITSAKV 457
+KE F+ G +T V
Sbjct: 496 KKELRSHFSKCGEVTRVHV 514
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
T ++V + + ++ FE++G I V+ K+ G S+G+GFV F++ +AA RAC
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 227 ELN 235
+N
Sbjct: 82 NMN 84
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 229
N++V + + +D ML F Y + +VM+ + G SRGFGFV+F + A+ A E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 230 LNGKEL 247
+ GK L
Sbjct: 200 ITGKWL 205
Score = 41.5 bits (93), Expect = 3e-04
Identities = 37/136 (27%), Positives = 65/136 (47%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VYV N ++ +L+++F G + S K++ K+ + +GFV + D +A A + L
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS---YGFVHYFDRRSAGLAILSL 111
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
NG+ L G+P+ V A +R E S N++V +L + D L
Sbjct: 112 NGRHLF-GQPIKVNWAYASGQR--------EDTSSH-------FNIFVGDLSPEVTDAML 155
Query: 413 RKEFAPFGTITSAKVM 460
F+ + T + A+VM
Sbjct: 156 FTCFSVYPTCSDARVM 171
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 208
GE +L ++V ++ S+ ++ +F KYG I +++ S+G F+ +E +
Sbjct: 99 GELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQ 158
Query: 209 AERACIELNGKELVEGK--PLYVGRAQKKAERQKELKRK 319
A A +NGK +EG PL V A + ER +K
Sbjct: 159 AVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 356 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
+G NL++ N+ D+ L F FG + SAKV ++
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVD 382
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 226
+++V + D SD +L + F EKY + + KV+ + G S+G+GFV F D + +A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 227 ELNG 238
E+NG
Sbjct: 258 EMNG 261
Score = 35.1 bits (77), Expect = 0.024
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = +2
Query: 128 ITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 304
I S KV+ K++G S G+GFV FE D A++ E NG + + + +K
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEK 188
Query: 305 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA-PFGTITSAKVMLE 466
L+ L +++V +L + D L + F+ + ++ +AKV+L+
Sbjct: 189 RLENNGPDL-----------SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLD 232
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 20 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFE 196
+E ++++VK F + S+ LK +F ++G++T+ K++ + S G+G+V F
Sbjct: 48 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 107
Query: 197 DPDAAERACIELNGK 241
+ A+ A +NGK
Sbjct: 108 SKEDAQSAVEAMNGK 122
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 45.2 bits (102), Expect = 2e-05
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++D + AC L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 233 NGKELVEGKPLYVGRAQ-----KKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDT 394
NG ++ + K L V RA +K E++ L +Q+ +R+ G V V L
Sbjct: 421 NGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQV 479
Query: 395 IDDERLRKE 421
+ ++ LR +
Sbjct: 480 VTEDELRDD 488
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 45.2 bits (102), Expect = 2e-05
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++D + AC L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 233 NGKELVEGKPLYVGRAQ-----KKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDT 394
NG ++ + K L V RA +K E++ L +Q+ +R+ G V V L
Sbjct: 421 NGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQV 479
Query: 395 IDDERLRKE 421
+ ++ LR +
Sbjct: 480 VTEDELRDD 488
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 45.2 bits (102), Expect = 2e-05
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++D + AC L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 233 NGKELVEGKPLYVGRAQ-----KKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDT 394
NG ++ + K L V RA +K E++ L +Q+ +R+ G V V L
Sbjct: 421 NGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQV 479
Query: 395 IDDERLRKE 421
+ ++ LR +
Sbjct: 480 VTEDELRDD 488
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEK--YGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+YV N L+++F + +++ V +G S G+GFV+F + AE A +
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 230 LNGKELVEGKPLYVGRAQKKAERQKE 307
LNGKE++ G+P+ + + + A ++
Sbjct: 256 LNGKEIM-GRPITLKFSLRSASESED 280
Score = 35.1 bits (77), Expect = 0.024
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Frame = +2
Query: 32 EKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAA 211
+ + L ++V N S + ++F + G + + +++ + DG +RGF FV + A
Sbjct: 89 QNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEA 148
Query: 212 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL--TRYQGVNLYVKNL 385
+ A I+ V G+ + V A++ +K + L S TR++ LYV NL
Sbjct: 149 Q-AAIDKFDTFQVSGRIISVSFARR---FKKPTPKSPNDLPSPAPGDTRHK---LYVSNL 201
Query: 386 DDTIDDERLRKEF--APFGTITSAKVMLED 469
LR+ F A F + SA+V+ D
Sbjct: 202 AWKARSTHLRELFTAADFNPV-SARVVFAD 230
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
T +YV +++ L+D FE++G I + VM K +GF F+ +E + A +A
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRK 319
++GK ++G+ ++V A+ +++ + R+
Sbjct: 137 GMHGK-FLDGRVIFVEEAKTRSDMSRAKPRR 166
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 232
++V D+ K+ F ++G + H++M G SRGFGFV +E D + +
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKG 191
Query: 233 NGKELVEGKPLYVGRAQKK 289
N EL G + + +A+ K
Sbjct: 192 NRIEL-SGTQVEIKKAEPK 209
Score = 42.3 bits (95), Expect = 2e-04
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Frame = +2
Query: 77 EDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 253
E S E LK F KYG IT +M + G RGFGFV + D ++ +++
Sbjct: 52 ETTSAEFLKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK---------VIQ 101
Query: 254 GKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPF 433
+ +G +Q E+KR + S ++ ++V + ++DD+ ++ F F
Sbjct: 102 DNHIIIG-------KQVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQF 153
Query: 434 GTITSAKVM 460
G + ++M
Sbjct: 154 GELKEHQIM 162
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 44.8 bits (101), Expect = 3e-05
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Frame = +2
Query: 14 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVA 190
R +E+ ++ + ++V G D E L + F++YG I K ++ K G S+G+GF+
Sbjct: 128 RIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Query: 191 FEDPDAAERACIELNGK--------ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 346
++ A A + K +L P++ G A + + SE
Sbjct: 188 YKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAA----AVSAPAQHSNSEHT 243
Query: 347 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
+ +YV N+ +D ++L F+ FG I + L+
Sbjct: 244 QK----KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLD 279
Score = 32.7 bits (71), Expect = 0.13
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIE 229
+YV N G + + L F K+G I + + K G +GF ++ ++A+RA E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 44.8 bits (101), Expect = 3e-05
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Frame = +2
Query: 14 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVA 190
R +E+ ++ + ++V G D E L + F++YG I K ++ K G S+G+GF+
Sbjct: 128 RIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Query: 191 FEDPDAAERACIELNGK--------ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 346
++ A A + K +L P++ G A + + SE
Sbjct: 188 YKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAA----AVSAPAQHSNSEHT 243
Query: 347 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
+ +YV N+ +D ++L F+ FG I + L+
Sbjct: 244 QK----KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLD 279
Score = 32.7 bits (71), Expect = 0.13
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIE 229
+YV N G + + L F K+G I + + K G +GF ++ ++A+RA E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 44.8 bits (101), Expect = 3e-05
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Frame = +2
Query: 14 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVA 190
R +E+ ++ + ++V G D E L + F++YG I K ++ K G S+G+GF+
Sbjct: 128 RIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Query: 191 FEDPDAAERACIELNGK--------ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 346
++ A A + K +L P++ G A + + SE
Sbjct: 188 YKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAA----AVSAPAQHSNSEHT 243
Query: 347 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
+ +YV N+ +D ++L F+ FG I + L+
Sbjct: 244 QK----KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLD 279
Score = 32.7 bits (71), Expect = 0.13
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIE 229
+YV N G + + L F K+G I + + K G +GF ++ ++A+RA E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 44.8 bits (101), Expect = 3e-05
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +2
Query: 35 KAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAA 211
K K VYV D ++ L +F +YG I + + K G S+GF F+A+ED +
Sbjct: 31 KYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST 90
Query: 212 ERACIELNGKELVEGKPLYVGR--AQKKAERQKELKRK 319
A LNG LV G+ + V A KK E + E R+
Sbjct: 91 ILAVDNLNG-ALVLGRTIKVDHCGAYKKHEEEDEETRR 127
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +2
Query: 41 KLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAER 217
++ ++V +D+ L+ +F +G+I +++ + +GFGF+ F+ D A +
Sbjct: 4 RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARK 63
Query: 218 ACIELNGKELVEGKPLYVGRAQKKAE 295
A L+GK +V+G+ ++V A+ E
Sbjct: 64 ALKSLDGK-IVDGRLIFVEVAKNAEE 88
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+V V N ED L ++F +G +T H + + SRGFGFV+F + A+RA +
Sbjct: 175 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
Query: 230 LNG 238
LNG
Sbjct: 235 LNG 237
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.4 bits (100), Expect = 4e-05
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNG 238
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NG
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 44.4 bits (100), Expect = 4e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 232
++V N + E L F + G + +V++ D G SRG+GFV + E A L
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 233 NGKELVEGKPLYVGRAQKK 289
+G EL EG+ + V AQ K
Sbjct: 239 DGFEL-EGRAIRVNLAQGK 256
Score = 41.5 bits (93), Expect = 3e-04
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Frame = +2
Query: 26 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 202
L A + T +Y N + L + + + +V+Y +D G SRGF FV +
Sbjct: 77 LDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNV 136
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 382
+ L+G E Y+GRA K K K E L E T ++ L+V N
Sbjct: 137 EDCNIIIDNLDGTE-------YLGRALKVNFADKPKPNK-EPLYPE--TEHK---LFVGN 183
Query: 383 LDDTIDDERLRKEFAPFGTITSAKVMLE 466
L T+ E L F G + A+V+ +
Sbjct: 184 LSWTVTSESLAGAFRECGDVVGARVVFD 211
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.4 bits (100), Expect = 4e-05
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDP 202
G L T++ V+N D E L+ FE++G + + +D G+ RGFGFV F DP
Sbjct: 29 GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDI-YLPRDYYTGDPRGFGFVQFMDP 87
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 319
A A ++G L+ G+ L V A++ ++ E++ +
Sbjct: 88 ADAADAKHHMDG-YLLLGRELTVVFAEENRKKPTEMRAR 125
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSH----KVMY-KDDGNSRGFGFVAFEDPDAAER 217
N++V + + +D L D F + +S+ +VM+ + G SRGFGFV+F + A+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 218 ACIELNGK 241
A E+NGK
Sbjct: 209 AINEMNGK 216
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VY N ++ +L+++F G I S K++ KD + +GFV + D A A + L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 233 NGKELVEGKPLYVGRAQKKAERQ 301
NG+ + G+P+ V A +R+
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQRE 142
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.0 bits (99), Expect = 5e-05
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDPDAAERAC 223
T++ V+N D E L+ FE++G + + +D G+ RGFGF+ F DP A A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDI-YLPRDYYTGDPRGFGFIQFMDPADAAEAK 95
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 343
+++G L+ G+ L V A++ ++ E++ + +S R
Sbjct: 96 HQMDG-YLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNR 134
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.0 bits (99), Expect = 5e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+V V N ED + L ++F +G +T + + + G SRGFGFV F + A+RA +
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 230 LNG 238
LNG
Sbjct: 274 LNG 276
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 44.0 bits (99), Expect = 5e-05
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
++V G D + L D F++YG I K V+ K G S+G+GF+ F+ A A +
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 412
K + + A + + + E + R +YV N+ ID ++L
Sbjct: 190 QKK--IGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQR----KIYVSNVSADIDPQKL 243
Query: 413 RKEFAPFGTITSAKVMLE 466
+ F+ FG I + L+
Sbjct: 244 LEFFSRFGEIEEGPLGLD 261
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 43.2 bits (97), Expect = 9e-05
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
FT +YV E L + F+++G I V+ ++ S+G+GFV F+D ++A RAC
Sbjct: 12 FTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
Query: 224 IELNGKELVEGK 259
+ N +EG+
Sbjct: 72 KDPN--PTIEGR 81
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 43.2 bits (97), Expect = 9e-05
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV N + S++ L+ +FE +G + +V + G +GFGFV F + A A + LN
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNA-LNLN 345
Query: 236 GKELVEGKPLYVGRAQKKAE 295
G+ + G+ + V + E
Sbjct: 346 GQLEIAGRAIKVSAVTDQTE 365
Score = 41.5 bits (93), Expect = 3e-04
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Frame = +2
Query: 104 DMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 280
+ F + G++ ++ M + SRG G+V F D + A I L+G+ L+ G+P+ V
Sbjct: 200 EFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA-IALSGQPLL-GQPVMV--- 254
Query: 281 QKKAERQKELKRKFEQLKSE--RLTRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITS 448
K +E +K L + L Y G LYV NL + ++ LRK F FG++
Sbjct: 255 -KPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVEL 313
Query: 449 AKV 457
+V
Sbjct: 314 VQV 316
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 42.7 bits (96), Expect = 1e-04
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++ + G + +D++L F ++ KV+ K G ++G+GFV+F +P A E+
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 233 NGKELVEGKPLYVGRA-------QKKAERQKELKRK 319
NGK V +P+ + ++ Q+ AERQK K
Sbjct: 199 NGK-YVGNRPIKLRKSSWKERTDQEAAERQKHHSNK 233
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 86 SDEM-LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 259
+DE L++ F KYG + K++ ++ G SRGF FV F + A A ++L+G++L G+
Sbjct: 45 TDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA-MQLDGQDL-HGR 102
Query: 260 PLYVGRAQKK 289
+ V A ++
Sbjct: 103 RIRVNYATER 112
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRG 175
P K KE E TN+Y+ D+ L ++F +G I KV+ KD G S+G
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI-KDRVTGLSKG 522
Query: 176 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 286
+GFV + D A A +NG EG+ L V A K
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRF-EGRTLAVRIAGK 558
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 353 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
Y NLY+ L ++D+ L F+ FG I AKV+
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI 512
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRG 175
P K KE E TN+Y+ D+ L ++F +G I KV+ KD G S+G
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI-KDRVTGLSKG 522
Query: 176 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 286
+GFV + D A A +NG EG+ L V A K
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRF-EGRTLAVRIAGK 558
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 353 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
Y NLY+ L ++D+ L F+ FG I AKV+
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI 512
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 42.3 bits (95), Expect = 2e-04
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 226
+++V + D +D +L++ F Y + KV+ G S+G+GFV F + RA
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 227 ELNG---------------KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 361
E+NG K+ V + YV +A + + + +
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTC 236
Query: 362 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
+ V NLD + +E L+K F+ G + K+ G
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKG 273
Score = 32.7 bits (71), Expect = 0.13
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
T + V N ++ ++E LK F + G +V+Y ++G+G+V F+ +AE A
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLG-----EVIYVKIPATKGYGYVQFKTRPSAEEAVQR 291
Query: 230 LNGK 241
+ G+
Sbjct: 292 MQGQ 295
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKEL 247
+ L F + G + S KV+ K G G+GF+ F AAER NG ++
Sbjct: 37 ENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQM 90
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
T V+V D E + D F KYG I ++ K S+G+GFV F+D AA RAC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACI 226
+ ++VK ++E L F +YG++ V M K +GF +V F + AE+A +
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 227 ELNGKELVEGK 259
ELN +LV+G+
Sbjct: 81 ELNA-QLVDGR 90
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
+T V+V + + ++ FE++G I ++ K+ G S+G+GFV F + D+A RA
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 224 IELN 235
+ N
Sbjct: 76 ADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 223
+T V+V + + ++ FE++G I ++ K+ G S+G+GFV F + D+A RA
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 224 IELN 235
+ N
Sbjct: 76 ADPN 79
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
+ ++V E+LK+ F +G+I V+ ++ G SRGFGFV ++ + A A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 227 ELNGKEL 247
+ KEL
Sbjct: 96 AMQNKEL 102
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
++YV ++ L+D F K G++T H V+ SRGFGF++ + A R CI
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR-CIR 134
Query: 230 LNGKELVEGKPLYVGRAQKKAER 298
+++G+ + V +A+++ R
Sbjct: 135 SLDHSVLQGRVITVEKARRRRGR 157
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 265
+D+ L+ +F + R+ + + +GFGF+ FE D A++A LNGK +V G+ +
Sbjct: 83 TDQSLRQLFAPFARLIKDQQTQRP----KGFGFITFESEDDAQKALKALNGK-IVNGRLI 137
Query: 266 YVGRAQKKAERQKELK 313
+V A++ LK
Sbjct: 138 FVETAKEVEAPTTSLK 153
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+YV N + S+ L+ +FE +G + ++ + + G +GFGF+ F + ++ A I L
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 233 NGKELVEGKPLYV 271
NGK + G+ + V
Sbjct: 327 NGKLEIAGRTIKV 339
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
T +Y+ F + ++ F ++G + +V K G S+ FGF+ FEDP+ AE A
Sbjct: 60 TVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Query: 227 ELNGKELVE 253
+N L+E
Sbjct: 120 AMNDYLLME 128
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 41.1 bits (92), Expect = 4e-04
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKEL 247
++ ++ F ++G + K++ ++ G S+GF FV F+D D+ A +NG+EL
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQEL 110
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 40.7 bits (91), Expect = 5e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 VYVKNF-GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+ VKN + ++E L+D+F + G I K+ K DG SR F ++ F A+ A +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 233 N 235
N
Sbjct: 64 N 64
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 40.7 bits (91), Expect = 5e-04
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +2
Query: 80 DFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG 256
D + LKD K+G + VM + G SRGFG+V F + A+ A L G+ +
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA---LKGEHFLGN 69
Query: 257 KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFG 436
+ L V A K E ++ K ++TR ++V + ++ + R F +G
Sbjct: 70 RILEVKVATPKEEMRQPAK---------KVTR-----IFVARIPSSVSESDFRSHFERYG 115
Query: 437 TIT 445
IT
Sbjct: 116 EIT 118
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 17 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS--RGFGFVA 190
++E+ + AK T ++V S+ + FE+YG IT M KD + RG GF+
Sbjct: 80 KEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITD-LYMPKDYNSKQHRGIGFIT 138
Query: 191 FEDPDAAE 214
F D+ E
Sbjct: 139 FSSADSVE 146
Score = 32.3 bits (70), Expect = 0.17
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS--RGFGFVAFEDPDAAER 217
++V ++ S + L+D F ++G I + KD S RGFGFV F + A+R
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIP-KDPKRSGHRGFGFVTFAENGVADR 296
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 40.7 bits (91), Expect = 5e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
S++ L+ FE +G + K+ M K S+G+ F+ + +AA A E+NGK ++ G
Sbjct: 294 SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGK-IINGWM 352
Query: 263 LYVGRAQKKAERQKELKRKF 322
+ V A+ K RQ + F
Sbjct: 353 IVVDVAKTKPFRQNRSQPSF 372
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.7 bits (91), Expect = 5e-04
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VYV NF D L+ +F K+GR+ +V K G+ FV FED AE A
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRV--KRVDMKS-----GYAFVYFEDERDAEDAIRRT 55
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER- 409
+ G+ K + ++ R + + ++R T+ L+V N D ER
Sbjct: 56 DNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTK----TLFVINFDPIRTRERD 111
Query: 410 LRKEFAPFGTITSAKV 457
+ + F P+G + + ++
Sbjct: 112 MERHFEPYGKVLNVRM 127
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 40.7 bits (91), Expect = 5e-04
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++ N + +++ F++ G + + +DDG+ RGFG V F + A++A +E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA-LEF 357
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 403
+G+ L+ G+ + + AQ++ ER + + F + G ++VK D ++ +
Sbjct: 358 HGRPLL-GREIRLDIAQERGERGE--RPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSE 414
Query: 404 E----RLRKEFAPFGTITSAKVMLE 466
+ LR+ F+ G I + V ++
Sbjct: 415 DDIKNTLREHFSSCGEIKNVSVPID 439
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 226
T V+V + + ++ F+++G I ++ K G S+G+GFV F D D+A RA
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 227 ELN 235
+ N
Sbjct: 77 DPN 79
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 39.9 bits (89), Expect = 9e-04
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 2 PRKXREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGF 178
P+ + +A+ TN++V + + E L+ F ++G + KV+ + G S+GF
Sbjct: 40 PQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGF 99
Query: 179 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 301
GFV + + + + ++GK ++G ++ A+ + + Q
Sbjct: 100 GFVRYATLEDSAKGIAGMDGK-FLDGWVIFAEYARPREQSQ 139
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +2
Query: 290 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERA 220
T++YV++ + + +ML+ F+++G IT+ + + G +GFV FE+ DAA RA
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 356 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 463
+G ++YV++L + + L EF FG IT+ + +
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQV 352
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 39.1 bits (87), Expect = 0.002
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
V+V NF + L+ +F+KYGR+ +V K G+ FV FED AE A +L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV--DRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 236 GKEL-VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER- 409
E + L V A+ + R + + LK + L+V N D E
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTK-------TLFVINFDPIRTKEHD 109
Query: 410 LRKEFAPFGTITSAKV 457
+ K F P+G +T+ ++
Sbjct: 110 IEKHFEPYGKVTNVRI 125
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC 223
T +YV E L FE++G I KV+ S+GFGFV F + ++A RAC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 38.7 bits (86), Expect = 0.002
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV+N + + E + D+F KYG I ++ D ++G FV +ED A+ A L+
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAI--RQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLS 78
Query: 236 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE-RLTRYQ 358
G V + L V Q ++ +KF+Q KSE +T+ Q
Sbjct: 79 GFN-VANRYLIVLYYQ-----HAKMSKKFDQKKSEDEITKLQ 114
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.7 bits (86), Expect = 0.002
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Frame = +2
Query: 62 VKNFGEDFSDEMLKDMFEKY---GRITSHKVM-YKDDGN--SRGFGFVAFEDPDAAERAC 223
VKN +DE LK F K G+I S ++ +K + S G+GFV F+ + A
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 224 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 403
+L G L +G L + + E ++ K + K + T+ L+VKN+
Sbjct: 633 RDLQGTVL-DGHALIL----RFCENKRSDKVGKDSNKDKPCTK-----LHVKNIAFEATK 682
Query: 404 ERLRKEFAPFGTITSAKV 457
LR+ F+PFG I S ++
Sbjct: 683 RELRQLFSPFGQIKSMRL 700
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 146 MYKDDGNSRGFGFVAFEDPDAAERACIELNGKEL 247
M +DG SR FGF+ F A++A N L
Sbjct: 1 MRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNTYL 34
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VYV D ++E ++ +F YG + + K++ + +GFV F + +A+ A ++
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 233 NGKEL 247
+GK +
Sbjct: 68 DGKSI 72
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +2
Query: 29 GEKAKLFT---NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFED 199
GE+ ++ T ++V + + +++ ++++F ++G + +M + SRG GFV +
Sbjct: 201 GERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSS 260
Query: 200 PDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 307
+ A A LNG + G +PL V A+ K + E
Sbjct: 261 KETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +2
Query: 29 GEKAKLFT---NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFED 199
GE+ ++ T ++V + + +++ ++++F ++G + +M + SRG GFV +
Sbjct: 201 GERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSS 260
Query: 200 PDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 307
+ A A LNG + G +PL V A+ K + E
Sbjct: 261 KETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 37.9 bits (84), Expect = 0.003
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRI--TSHKVMYKDD------------GNSRGFGFVAF 193
+Y+ N D + + LKD+F G++ K YKD GN +G +A+
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 194 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 298
EDP AA A N E+ G + V A+K A R
Sbjct: 342 EDPSAAHSAGGFFNNYEM-RGNKISVTMAEKSAPR 375
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 37.9 bits (84), Expect = 0.003
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRI--TSHKVMYKDD------------GNSRGFGFVAF 193
+Y+ N D + + LKD+F G++ K YKD GN +G +A+
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 194 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 298
EDP AA A N E+ G + V A+K A R
Sbjct: 342 EDPSAAHSAGGFFNNYEM-RGNKISVTMAEKSAPR 375
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERACI 226
T ++V N + + L+ FE++G++ V+ + G S+G+GF+ F D + RA
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL- 70
Query: 227 ELNGKELVEGK 259
N K +++G+
Sbjct: 71 -QNSKPIIDGR 80
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 37.9 bits (84), Expect = 0.003
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 232
+++ +++E ++D+ + YG++ ++ + FGFV F+ +AA +
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFI 452
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 355
N EL EG+ RA+ QK K + + +S++ +R+
Sbjct: 453 NNSELGEGEDKAKVRARLSRPLQKAGKGR-QSSRSDQRSRH 492
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERAC 223
+ ++V +++ L+++ KYGRI + + V + G SRG+GFV +E RA
Sbjct: 63 YCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAY 122
Query: 224 IELNGKELVEGKPLYV 271
+ + L++G+ + V
Sbjct: 123 EDAH-HSLIDGREIIV 137
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
++YV ++ L+D F K G++T H V+ SRGFGF++ + A R CI
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR-CIR 104
Query: 230 LNGKELVEGKPLYV 271
+++G+ + V
Sbjct: 105 SLDHSVLQGRVITV 118
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG--FGFVAFEDPDAAERA 220
F +VYV+N D S +++ F+ +G I V + + G + FV FED + E A
Sbjct: 256 FKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 315
Query: 221 CIELNGKELVEGKPLYVGRAQKKAERQK 304
++ P+Y+G Q E ++
Sbjct: 316 ---------IKASPIYLGGRQVYIEERR 334
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 463
++YV+NL I + +EF FGTI V L
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFL 290
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 47 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG--FGFVAFEDPDAAERA 220
F +VYV+N D S +++ F+ +G I V + + G + FV FED + E A
Sbjct: 315 FKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 374
Query: 221 CIELNGKELVEGKPLYVGRAQKKAERQK 304
++ P+Y+G Q E ++
Sbjct: 375 ---------IKASPIYLGGRQVYIEERR 393
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 365 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 463
++YV+NL I + +EF FGTI V L
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFL 349
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V N + D F G + S ++M +G G+GFV F D ++A N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 236 GKELVEGK 259
G+ L + K
Sbjct: 306 GEYLHDHK 313
Score = 35.9 bits (79), Expect = 0.014
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V N + + D F+K G + +++ G G GFV F + AE A + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 236 GKELVEGKPLYVGRAQKKA 292
G E ++ +++ A KKA
Sbjct: 189 G-ECLDNNKIFLDVANKKA 206
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V N + F+ + +++ G G GFV F + A++A ++N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 236 GKEL 247
G+ L
Sbjct: 551 GENL 554
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.1 bits (82), Expect = 0.006
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +2
Query: 29 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDP 202
G + ++ V+N D E L++ FE++G + + +D G RGF FV F D
Sbjct: 40 GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIP-RDYYSGQPRGFAFVEFVDA 98
Query: 203 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 319
A A +N + G+ + V A + +R +E++ K
Sbjct: 99 YDAGEAQRSMNRRSFA-GREITVVVASESRKRPEEMRVK 136
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 98 LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVG 274
L +F KYG++ + + G+SRGF FV ++ D A +A L+G+ +V+G+ + V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGR-VVDGREITVQ 90
Query: 275 RAQKKAERQK 304
A+ +K
Sbjct: 91 FAKYGPNAEK 100
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 98 LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVG 274
L +F KYG++ + + G+SRGF FV ++ D A +A L+G+ +V+G+ + V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGR-VVDGREITVQ 90
Query: 275 RAQKKAERQK 304
A+ +K
Sbjct: 91 FAKYGPNAEK 100
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC--- 223
++V ++ K F ++G IT VMY RGFGF++++ +A ++
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 224 -IELNGKELVEGK 259
ELNGK +VE K
Sbjct: 95 FHELNGK-MVEVK 106
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 35.9 bits (79), Expect = 0.014
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
T +YV +D+ L+ F K G++ S VM SRGF FV AER CI
Sbjct: 72 TTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER-CI 130
Query: 227 ELNGKELVEGK 259
+ + ++EG+
Sbjct: 131 KYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 35.9 bits (79), Expect = 0.014
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
T +YV +D+ L+ F K G++ S VM SRGF FV AER CI
Sbjct: 71 TTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER-CI 129
Query: 227 ELNGKELVEGK 259
+ + ++EG+
Sbjct: 130 KYLNQSVLEGR 140
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 35.5 bits (78), Expect = 0.019
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 356 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
Q NLYV NL +D+ L + F FG I S K+M
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIM 219
Score = 33.5 bits (73), Expect = 0.075
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY----KDDGNSRGFGFVAFEDPDAAER 217
TN+YV N + L F ++G I S K+M+ ++ R GFVAF + E
Sbjct: 187 TNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEA 246
Query: 218 ACIELNG 238
A ++ G
Sbjct: 247 AKEKMQG 253
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.5 bits (78), Expect = 0.019
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++++ D + E L+ +F YG + V+ K G S+G+GFV F D A A E
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 233 NGK 241
+ K
Sbjct: 137 SKK 139
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.5 bits (78), Expect = 0.019
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 232
++++ D + E L+ +F YG + V+ K G S+G+GFV F D A A E
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 233 NGK 241
+ K
Sbjct: 137 SKK 139
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.5 bits (78), Expect = 0.019
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV+ + + + ++F +YG I + D RG+ FV F + A A LN
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268
Query: 236 GKELVEG--KPLYVGRAQKKAERQKELKRKF 322
G + G +PL V A K R E + F
Sbjct: 269 GLFTIRGSDQPLIVRFADPKKPRLGEQRSTF 299
Score = 31.5 bits (68), Expect = 0.30
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 3/158 (1%)
Frame = +2
Query: 5 RKXREKELGEKAK-LFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRG 175
RK R + + A +YV + ++ ++ +FEKYG +T ++ KD G
Sbjct: 94 RKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVT-EIILPKDKMTGERAA 152
Query: 176 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 355
+ F+ ++ + A L + G+ L V +AER E++ +
Sbjct: 153 YCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAER--------ERIGFAPVQLP 204
Query: 356 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 469
LYV+ L+ + + F+ +G I + L+D
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDD 242
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 35.1 bits (77), Expect = 0.024
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 356 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
Q NLYV NL +D+ L + F FG I S K+M
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIM 211
Score = 33.1 bits (72), Expect = 0.099
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY----KDDGNSRGFGFVAFEDPDAAER 217
TN+YV N + L F ++G I S K+M+ ++ R GFV+F + +
Sbjct: 179 TNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQA 238
Query: 218 ACIELNG 238
A E+ G
Sbjct: 239 AKDEMQG 245
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.7 bits (76), Expect = 0.032
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACI 226
+ + ++N D L+D FE++G + + G RGFGFV + + A A
Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELK 313
+N K ++ G+ + + A++ + +E++
Sbjct: 107 RMNHK-VIGGREIAIVFAEENRKTPQEMR 134
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV N D + ++D+F KYG + ++ K G+ FV FED A+ A +
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVV--QIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 236 G 238
G
Sbjct: 67 G 67
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV N D + ++D+F KYG + ++ K G+ FV FED A+ A +
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVV--QIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 236 G 238
G
Sbjct: 67 G 67
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
VYV N D + ++D+F KYG + ++ K G+ FV F+D AE A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVV--QIDLKVPPRPPGYAFVEFDDARDAEDA 61
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
VYV N D + ++D+F KYG + ++ K G+ FV F+D AE A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVV--QIDLKVPPRPPGYAFVEFDDARDAEDA 61
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
VYV N D + ++D+F KYG + ++ K G+ FV F+D AE A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVV--QIDLKVPPRPPGYAFVEFDDARDAEDA 61
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 34.3 bits (75), Expect = 0.043
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG-FGFVAFEDPDAAERACIEL 232
+Y+KN D + E LK +FE +G+I + G +GFV + + + RA
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 355
E ++G L A+ +A+++ KS+ Y
Sbjct: 330 ERYE-IDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNY 369
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.043
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 251 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 367
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 34.3 bits (75), Expect = 0.043
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
+YV N D ++D+F KYG I + K G+ FV FEDP A+ A +
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVD--IDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 236 G 238
G
Sbjct: 67 G 67
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 33.9 bits (74), Expect = 0.057
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 104 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 283
D F G + S +++ + G+GFV F P A A + NG+ L + K +++G A+
Sbjct: 700 DFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHK-IFLGVAK 758
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 104 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 280
D F+ G++ S ++ K +G GFV F + A++A NG+ L G L +G A
Sbjct: 582 DFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLC-GNKLILGMA 639
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 104 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKE 244
D F+ G++ + +++ G G GFV F D A++ + + E
Sbjct: 829 DFFKDAGQVVNVRLIVDQKGKPFGRGFVEFTSADEAKKVRLVYSNDE 875
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 33.9 bits (74), Expect = 0.057
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR-GFGFVAFEDPDAAERACIE 229
++ VK+ + + +++ +F+++G I ++ + NS + FV FE+ DAA+RA I+
Sbjct: 551 HIRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRA-IQ 609
Query: 230 LNGKELVEGKPLYVGRAQ 283
+ V+G YV + Q
Sbjct: 610 ASPLN-VDGHTTYVEQKQ 626
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.057
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 23 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFED 199
E ++ ++V + + E L +FE YG I V+ K G ++GFGFV F+
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 200 PDAAERACIE 229
A+ A E
Sbjct: 155 RKGAKEALKE 164
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.057
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 23 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFED 199
E ++ ++V + + E L +FE YG I V+ K G ++GFGFV F+
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 200 PDAAERACIE 229
A+ A E
Sbjct: 155 RKGAKEALKE 164
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 33.5 bits (73), Expect = 0.075
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERA 220
VY+ N E SD +L D+ + GR+ H K+ +GF F +E + A+ A
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 33.1 bits (72), Expect = 0.099
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG-FGFVAFEDPDAAERA 220
+Y+KN D + E LK +FE +G+I + G +GFV + + + RA
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 91
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.1 bits (72), Expect = 0.099
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VYV N + E ++ F+ G + ++ G +GF +V F + +A + A ++L
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA-LQL 148
Query: 233 NGKELVEGKPLYVGRAQKKAERQKE 307
N EL G+ L V + K+
Sbjct: 149 NESEL-HGRQLKVSPKRTNVPGMKQ 172
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.1 bits (72), Expect = 0.099
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
+VYV N + E ++ F+ G + ++ G +GF +V F + +A + A ++L
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA-LQL 148
Query: 233 NGKELVEGKPLYVGRAQKKAERQKE 307
N EL G+ L V + K+
Sbjct: 149 NESEL-HGRQLKVSPKRTNVPGMKQ 172
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 33.1 bits (72), Expect = 0.099
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFED----PDAAERA 220
++Y+K D + +L++ F+K+G I ++ + + FGFV FE A E +
Sbjct: 313 SIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQ-KGFCFGFVEFESASSMQSAIEAS 371
Query: 221 CIELNGKELV 250
+ LNG ++V
Sbjct: 372 PVMLNGHKVV 381
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+ VYV N ++ L+D F +G + S V + G + F+ FEDP A A
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG----YAFLDFEDPRDARDAIRA 57
Query: 230 LNGK 241
L+GK
Sbjct: 58 LDGK 61
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKV 457
+YV NLD + + L EF FG + S V
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWV 33
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 32.7 bits (71), Expect = 0.13
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
++YV N D + ++D+F KYGRI + K + FV FE AE A
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVD--IELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 233 NGKELVEGKPLYV-----GRAQKKAERQ 301
+G L +G L V GR Q ++R+
Sbjct: 66 DGYNL-DGCRLRVELAHGGRGQSSSDRR 92
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 98 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 265
+K F ++ S +++ +G G+GFV F A +A E NG+ L K L
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKIL 229
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/87 (21%), Positives = 40/87 (45%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
++YV N + E ++ F+ G + ++ G +GF +V F + +A + + I L
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI-L 162
Query: 233 NGKELVEGKPLYVGRAQKKAERQKELK 313
N EL G+ + V + ++ +
Sbjct: 163 NESEL-HGRQIKVSAKRTNVPGMRQFR 188
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.5 bits (68), Expect = 0.30
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 50 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 229
+ VYV N ++ L+D F +G I S V + G + F+ FED A A E
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG----YAFLDFEDSRDARDAIRE 57
Query: 230 LNGK 241
++GK
Sbjct: 58 VDGK 61
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKV 457
+YV NLD + + L EF FG I S V
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWV 33
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 380 NLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
N ++D R+ KE+AP GT+T VML G
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCG 281
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.40
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +2
Query: 5 RKXREKELGEKAK--LFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRG 175
+ RE++ GE+ V V ++ L++ F + G + V K RG
Sbjct: 3 KNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRG 62
Query: 176 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 325
F FV F + RA IEL V G+ + V +A + Q+ + E
Sbjct: 63 FAFVKFALQEDVNRA-IELKNGSTVGGRRITVKQAAHRPSLQERRTKAAE 111
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V+N + D L +FE+YG I + +Y RGF +++ D +A A L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDI---RTLY-TTCKHRGFVMISYYDIRSARMAMRSLQ 225
Query: 236 GKEL 247
K L
Sbjct: 226 NKPL 229
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 235
++V+N + D L +FE+YG I + +Y RGF +++ D +A A L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDI---RTLY-TTCKHRGFVMISYYDIRSARMAMRSLQ 225
Query: 236 GKEL 247
K L
Sbjct: 226 NKPL 229
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.9 bits (64), Expect = 0.92
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAA------- 211
V VK ++E L + ++G + +V+ + + G SRGF F+ F DAA
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRI 359
Query: 212 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 322
E I L+G++L+ GRA ++ +R +
Sbjct: 360 EHDGIVLDGRKLMFHYSQPTGRAGVSRRQEHASRRSY 396
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
++V+N D L +FE +G I S K SRGF +++ D AA A
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTACK----SRGFVMISYYDIRAAHAA 237
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITS 448
L+V+N++ +++D L F PFG I S
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS 213
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 56 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 220
++V+N D L +FE +G I S K SRGF +++ D AA A
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLYTACK----SRGFVMISYYDIRAAHAA 250
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITS 448
L+V+N++ +++D L F PFG I S
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS 226
>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial (PDHE1-A) identical to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}
Length = 389
Score = 29.9 bits (64), Expect = 0.92
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 8 KXREKELGEKAKLFTNVYVKNFGED 82
K ++ + E ++LFTNVYVK FG +
Sbjct: 351 KAKDCPMPEPSELFTNVYVKGFGTE 375
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +2
Query: 275 RAQKKAERQKELKRKFEQLKSERL 346
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 86 SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 262
+D L+ KYG + K K G S+G+ V F DP AA LNG G+P
Sbjct: 246 TDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPF-NGRP 304
Query: 263 LYV 271
V
Sbjct: 305 CVV 307
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
LYV L+ I ++ + F +G + S +VM EDG
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDG 261
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +2
Query: 317 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 469
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDE 75
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 47 FTNVYVKNFGEDFS-DEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERAC 223
F +YV+ FG FS D+ +K K+ + N F+ A E +
Sbjct: 342 FQTIYVEGFGSSFSEDDDIKSALSKHFSVCGEITRVFVPRNPSTGAIKGFKAKKALELSG 401
Query: 224 IELNGKELV 250
++ GKELV
Sbjct: 402 SKMTGKELV 410
>At3g12930.1 68416.m01611 expressed protein contains Pfam domain
PF02410: Domain of unknown function DUF143
Length = 238
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 59 YVKNFGEDFSDEMLKDMFEKYGRI 130
++ N ED +DEM D+F KYG++
Sbjct: 78 FLSNVSED-TDEMFDDLFNKYGKV 100
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +2
Query: 203 DAAERACI----ELNGKELVEGKPLYV 271
+ E AC+ EL G+E +EGKPLYV
Sbjct: 151 EVIECACVIELPELKGRERLEGKPLYV 177
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 239 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 367
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 28.3 bits (60), Expect = 2.8
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Frame = +2
Query: 41 KLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGF---GFVAFEDPDAA 211
+L+ N Y+ NF + + L+ + TS K G+S+ G +
Sbjct: 370 QLYYNNYMSNFKLEHAWRELRHNKKWCSTYTSENS--KGGGSSKRTKLNGGGVYSSSCNP 427
Query: 212 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 391
E I L+G+E V +PL V ++ K+ E++ K E+ +++ +R + NL+V + ++
Sbjct: 428 ESVPIALDGEEQVMDRPLGV-KSSKQKEKKVATKTMLEEREADSRSRLE--NLWVLDEEE 484
Query: 392 TIDD 403
+ D
Sbjct: 485 QVMD 488
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 466
LYV L D +++ L F PFG I K L+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLD 47
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 359 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG 472
GV L+V L +++ + L K F+P GT+ + + + G
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG 46
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 239 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 379
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 167 SRGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 307
SRG GFV + + A A LNG + G +PL V A+ K + E
Sbjct: 8 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 56
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 245 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 343
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 368 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM 460
L+V L+ +DE L F+ FGT+ SA V+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
>At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2)
identical to 2-isopropylmalate synthase (IMS2)
[Arabidopsis thaliana] GI:12330689
Length = 503
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 62 VKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD 157
+K G + SDE D+F +Y +T K D
Sbjct: 436 LKELGYEISDEKFNDIFSRYRELTKDKKRITD 467
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 275 RAQKKAERQKELKR---KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 430
+ +KKA+R KE K+ K +Q K + Q + + DDT++++ +E P
Sbjct: 133 KKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPP 187
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +2
Query: 134 SHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 313
S ++M +++ SR + D ++ K +++ +KK E ++E K
Sbjct: 200 SRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNAEMEKKKEEERERK 259
Query: 314 RKFEQLKSERLTRYQ 358
+K E+ + ER Y+
Sbjct: 260 KKMEKERLERAMNYE 274
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +2
Query: 242 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 421
E+++ K + + + +KE +F+ L+ ERL + + L V+ + + +DD RL++E
Sbjct: 559 EILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESA-LRVQIMQE-LDDIRLQRE 616
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 2 PRKXR-EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 130
P K R +K L E + L +K++ +FSDE ++YGR+
Sbjct: 339 PLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRL 382
>At5g18610.1 68418.m02203 protein kinase family protein contains
eukaryotic protein kinase domain, PROSITE:PS00107
Length = 513
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 227 ELNGKELVEGKPLYVGRAQKKAERQKELKRK 319
+L G+E G P VGR+ + R ++L R+
Sbjct: 452 DLEGQESQRGSPASVGRSSRGTPRNRDLDRE 482
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 26.6 bits (56), Expect = 8.6
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 68 NFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKE 244
N + S L+ +F+ YG I + YK FV F D A RA +NGKE
Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQR-----FVEFYDVRDAARAFDRMNGKE 273
Query: 245 LVEGKPLYV 271
+ GK + +
Sbjct: 274 -IGGKQVVI 281
>At3g15110.1 68416.m01911 expressed protein
Length = 266
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 258 LPSTSSLPFNSMQALSAASGSSKATKPKPLELPSSLYIT 142
LP++S+ PF+S ++ A S P PL+L +S+ +T
Sbjct: 62 LPTSSTSPFSSTNSIFATSDD-----PTPLQLATSVLLT 95
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 53 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 232
N++V + + ++ L ++F +YG I V +SRGF F+ + + A A L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 233 NGKEL 247
G L
Sbjct: 74 QGANL 78
>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 743
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 8 KXREKELGEKAKLFTNVYVKNF 73
K EK EK KL VY+KNF
Sbjct: 113 KFEEKGFLEKDKLIVEVYIKNF 134
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 132 VMRPYFSNISFNISSEKS 79
V+ PY +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 132 VMRPYFSNISFNISSEKS 79
V+ PY +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 132 VMRPYFSNISFNISSEKS 79
V+ PY +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,312,475
Number of Sequences: 28952
Number of extensions: 147832
Number of successful extensions: 1024
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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