Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31561
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 155 3e-39
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 72 6e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 8e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 2e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 4e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 42 5e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 42 5e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 5e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.004
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.95
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.1
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 25 5.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 6.7
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 155 bits (377), Expect = 3e-39
Identities = 70/77 (90%), Positives = 76/77 (98%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 336 SKEEYDESGPGIVHRKC 286
SK+EYDESGPGIV+RKC
Sbjct: 358 SKQEYDESGPGIVYRKC 374
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 71.7 bits (168), Expect = 6e-14
Identities = 33/76 (43%), Positives = 50/76 (65%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I
Sbjct: 303 VLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362
Query: 336 SKEEYDESGPGIVHRK 289
+ EEY I R+
Sbjct: 363 TSEEYKNDQNVIFRRR 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.3 bits (167), Expect = 8e-14
Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 6/83 (7%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 346
++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q
Sbjct: 351 IVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQ 409
Query: 345 MWISKEEYDESGP---GIVHRKC 286
+WIS++EY+E G ++ ++C
Sbjct: 410 LWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 69.7 bits (163), Expect = 2e-13
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQQM 343
V++GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL FQ +
Sbjct: 348 VVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHL 407
Query: 342 WISKEEYDESG 310
W+SK+EYDE G
Sbjct: 408 WVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 55.6 bits (128), Expect = 4e-09
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 370
V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 369 AS-LSTFQQMWISKEEYDESG 310
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.9 bits (94), Expect = 5e-05
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
V GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I
Sbjct: 324 VTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKI 382
Query: 336 SKEEYDESGPGIVHRK 289
++ EY E G I+ RK
Sbjct: 383 TRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 41.9 bits (94), Expect = 5e-05
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERKYSVWIGG 379
V+SGG+T++ +R+Q+++ + I + +I+ ++ +VW GG
Sbjct: 331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390
Query: 378 SILASLSTFQQMWISKEEYDESGPGIVHR 292
S+LA F +K +Y+E G I R
Sbjct: 391 SLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.9 bits (94), Expect = 5e-05
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -1
Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
+++GG PG+ R+++E+T++ P I + W G S + F+ +
Sbjct: 639 LITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKV 698
Query: 336 SKEEYDESGP 307
++EEY E GP
Sbjct: 699 TREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 507 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 337
GG +PG A +++ I + + I +I PP + ++ W G I + ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 336 SKEEYDESGPGIVHRK 289
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.95
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 390 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 289
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 465 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 355
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 227 ELGRAQHHTAPGSRGRAAXKHLRWT 301
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 215 RLRSELGRAQH-HTAPGSRGRAAXKHL 292
R R + GR + HTAP RGR H+
Sbjct: 95 RGRGQRGRGNYGHTAPNRRGRGRGGHM 121
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 439 DHQDQDHRSPREEVLRMDRWIHPG 368
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 236 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 69
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 398 YFLSGGAMILILMVEGARAVISFCILSAIPGY 493
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,862
Number of Sequences: 5004
Number of extensions: 28516
Number of successful extensions: 78
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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