Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31561
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              158   3e-39
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   2e-38
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             154   4e-38
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         154   4e-38
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      154   5e-38
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              152   1e-37
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                138   2e-33
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 51   7e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  50   2e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   3.0  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.0  
SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)                   27   9.2  
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   9.2  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  158 bits (383), Expect = 3e-39
 Identities = 72/77 (93%), Positives = 76/77 (98%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           VMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 272 VMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 331

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 332 SKQEYDESGPAIVHRKC 348


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  155 bits (377), Expect = 2e-38
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 261 VLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 320

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 321 SKQEYDESGPAIVHRKC 337


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  154 bits (374), Expect = 4e-38
 Identities = 70/77 (90%), Positives = 75/77 (97%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 359 SKQEYDESGPSIVHRKC 375


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  154 bits (374), Expect = 4e-38
 Identities = 70/77 (90%), Positives = 75/77 (97%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 358 SKQEYDESGPSIVHRKC 374


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  154 bits (373), Expect = 5e-38
 Identities = 70/77 (90%), Positives = 75/77 (97%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 359 SKQEYDESGPSIVHRKC 375


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  152 bits (369), Expect = 1e-37
 Identities = 69/77 (89%), Positives = 75/77 (97%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 358 SKQEYDESGPSIVHRKC 374


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  138 bits (335), Expect = 2e-33
 Identities = 62/77 (80%), Positives = 71/77 (92%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGG+TM+PGIADRMQKEI  LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 72  VLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWI 131

Query: 336 SKEEYDESGPGIVHRKC 286
           +KEEY E GP IVHRKC
Sbjct: 132 AKEEYHEYGPPIVHRKC 148


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITA----------------LAPSTIKIKIIAPPERKYSVWI 385
           V+SGG+TM+     R+Q++I                  + P  I+ ++I+   ++Y+VW 
Sbjct: 247 VLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWF 306

Query: 384 GGSILASLSTFQQMWISKEEYDESGPGI 301
           GGS+LAS   F  +  +K +YDE GP I
Sbjct: 307 GGSMLASTPEFYSVCHTKADYDEHGPSI 334


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIA---PPERKYSVWIGGSILASL 361
           +++GG T+  G  +R+ +E+ +  P ++++K+I+     E++++ WIGGSILASL
Sbjct: 176 IVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -1

Query: 432 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 310
           KI+I  PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPST-------IK-IKIIAPP-ERKYSVWIGGSILAS 364
           V+ GGT M PG   R+ +EI  L  S        IK +K+  PP     + W+GG+I  S
Sbjct: 82  VLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGS 141

Query: 363 LSTFQQMWISKEEYDE 316
           L        ++E Y +
Sbjct: 142 LEVLADRSTTRERYQQ 157


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 484 YRRQDAEGDHRPRALDHQDQDHRSPREE 401
           +RRQDA  DHR +  DH  QD   PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 374 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 511
           +DPP+  +Y L+GG  ++   ++       FCI     G++V  PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801


>SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 245 HHTAPG-SRGRAAXKHLRWTMPGP-DSSYSSFEIHICWKVDREARMD 379
           H T+P    G     H RWT+ GP  S YS+  + +  KV  E   D
Sbjct: 524 HVTSPNFPNGYPGNHHCRWTIRGPKHSKYSAIRLTLV-KVSLEREQD 569


>SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)
          Length = 126

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 481 RRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFP 362
           RRQ     HR R  D +D+D R      L  DR+ +  +P
Sbjct: 4   RRQGTATIHRYRQSDLRDRDRRRVLPRFLEQDRFDNSDYP 43


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 187 SGITRYNVLTVAFRTRTSTTPHSTGVT 267
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,336
Number of Sequences: 59808
Number of extensions: 252493
Number of successful extensions: 807
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)