Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31561
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.         159   5e-41
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.         159   5e-41
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.         159   5e-41
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.          157   3e-40
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             23   4.6  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   8.1  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  159 bits (386), Expect = 5e-41
 Identities = 73/77 (94%), Positives = 76/77 (98%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 359 SKQEYDESGPSIVHRKC 375


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  159 bits (386), Expect = 5e-41
 Identities = 73/77 (94%), Positives = 76/77 (98%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 359 SKQEYDESGPSIVHRKC 375


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  159 bits (386), Expect = 5e-41
 Identities = 73/77 (94%), Positives = 76/77 (98%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358

Query: 336 SKEEYDESGPGIVHRKC 286
           SK+EYDESGP IVHRKC
Sbjct: 359 SKQEYDESGPSIVHRKC 375


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score =  157 bits (380), Expect = 3e-40
 Identities = 72/77 (93%), Positives = 74/77 (96%)
 Frame = -1

Query: 516 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 337
           V+SGGTTMYPGIADRMQKEIT+LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ MWI
Sbjct: 299 VLSGGTTMYPGIADRMQKEITSLAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQTMWI 358

Query: 336 SKEEYDESGPGIVHRKC 286
           SK EYDE GPGIVHRKC
Sbjct: 359 SKHEYDEGGPGIVHRKC 375


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 213 DGCVQNSDEHNTTQHRGHAAAL 278
           +GCV++ +EH      G+ A+L
Sbjct: 33  EGCVRSREEHARAGQEGNVASL 54


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 281 KQRGRVTPVLCGVVLVRVLNATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLI 117
           + R R +   C VV + V NA  S  +L I        TP  L   I  ++ N +
Sbjct: 533 RSRNRYSGRYCAVVTLDVTNAFNSASWLAIANALQRINTPKYLYDIIGDYFRNRV 587


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,725
Number of Sequences: 2352
Number of extensions: 8037
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)