Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31560
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   2e-04
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.18 
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   0.72 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   1.3  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   2.2  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    27   2.2  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   2.9  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   3.8  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    25   8.9  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +2

Query: 125 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLA-GANDEEAFEIDQNVEFLH 295
           P +   +P G+ P++V DG  Y +S AI  +L RKYG +   ++E+  E+++   ++H
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMH 97


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 274 VDLEGLLVIGPGEPVLAAEVPADGGA 197
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 275 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 385
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 154 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 26
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 209 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 382
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 383 YPDMLKKLNSIVEANK 430
           Y D+L KL +     K
Sbjct: 172 YEDLLPKLKTATPPQK 187


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 209 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 382
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 383 YPDMLKKLNSIVEANK 430
           Y D+L KL +     K
Sbjct: 172 YEDLLPKLKTATPPQK 187


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 212 RYLGRKY-GLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVYP 388
           ++ GRK   +   + + A ++ +  E L         ++Y+  + L  + H +FS  V  
Sbjct: 146 KFFGRKVININQMHQDMAVDVPEGFELLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVN 205

Query: 389 DMLKKL 406
            M+K L
Sbjct: 206 TMVKVL 211


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 338 EELKAKKHEDFSKNVYPDMLKKLNSIVEANKRSH 439
           EELKAK +  FSK  Y   +      +  ++R+H
Sbjct: 3   EELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNH 36


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 334 SFVVYSGRFGANIVQELHV 278
           SF  YSG+F +NIV+++ +
Sbjct: 143 SFKGYSGQFSSNIVEQIRL 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,633
Number of Sequences: 5004
Number of extensions: 30365
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)