Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31560
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   5.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.5  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 PDFKPKTPFGQMPVLVIDGK 184
           P+ KP+TPF    +L ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 95  EDHRVLSADW 124
           ED+R+L  DW
Sbjct: 74  EDYRILDVDW 83


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 352 CF*LLISFVVYSGRFGANIVQEL 284
           C     + V  SG F  NIVQEL
Sbjct: 65  CILKQFNIVDESGNFKENIVQEL 87


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 352 CF*LLISFVVYSGRFGANIVQEL 284
           C     + V  SG F  NIVQEL
Sbjct: 65  CILKQFNIVDESGNFKENIVQEL 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,094
Number of Sequences: 438
Number of extensions: 1979
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)