Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31550
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    28   0.72 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.2  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   2.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   5.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   8.9  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   8.9  

>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 102 LKSKRKFCPSSKXVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 278
           L+ K K+ P  K     N+  +   I      E  + N+T ++A+EE  K+     +PK
Sbjct: 239 LRQKNKYLPKIKKWIDENSPGDTL-IPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 102 LKSKRKFCPSSKXVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKN 281
           LK K +   S K V  LN   +     +      ++D+  +KKA  + +   ++   PKN
Sbjct: 112 LKGKPQLVKSDKGVLPLNKQSDILNSYERVLSNASVDSALDKKAEVDIIPFDKSVMEPKN 171

Query: 282 LEFS 293
           + F+
Sbjct: 172 ITFN 175


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 132 SKXVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 239
           SK  S       YYK+ K Y  + N D     K VE
Sbjct: 94  SKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 405 NQGQFL-YAFYIAVIQRSDCHG 467
           N G FL YAF+  VI+  D HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  RQKMWMPYLLKSKRKFCPSSKXVSQLNTDDE 167
           +Q +   + + +KRK  P S  +   N+DDE
Sbjct: 561 KQAIQEAHTINTKRKLWPQSTLIQAPNSDDE 591


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 198 RYHSLCQFYNIHH 160
           +Y++ C FYNI H
Sbjct: 35  KYYNFCPFYNIQH 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,275
Number of Sequences: 5004
Number of extensions: 38825
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)