Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31550
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_13261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   27   9.2  

>SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 763

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = -1

Query: 261 SCTSSEILQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHXWKKDRIFFC--FSTNTAS 88
           +C SS  L   +C  SC     Y   CQ  N   QC      WK D   F   F  N  S
Sbjct: 551 ACASSSCLHGGTCVRSCHDEDEYQCFCQPDNKGQQC----QQWKADASLFDIEFGENETS 606

Query: 87  TF 82
           ++
Sbjct: 607 SY 608


>SB_13261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 195 IEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALF 335
           +E N+ + ++   +    +M RTG    +   S FY K+ +E I ++
Sbjct: 27  LEENITDMSDFSVISNTEEMIRTGHNHSSSNSSEFYTKLSEETITIY 73


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -1

Query: 213  CPYSFRYHSLCQFYNIHHQCLVGSHXWKKDRIFFCFSTNTASTFF 79
            CP+ +   +L     +++ C  G H W K  + +    N + T +
Sbjct: 1912 CPHGYETIALAS-PTLYNPCGTGRHMWWKSNVSYVVELNVSKTIY 1955


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,293
Number of Sequences: 59808
Number of extensions: 285304
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)