Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31550
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.11 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.11 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   0.46 
At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    31   0.61 
At3g10150.1 68416.m01217 calcineurin-like phosphoesterase family...    29   2.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   3.2  
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi...    27   7.5  
At4g23930.2 68417.m03442 expressed protein hin1 protein homolog,...    27   9.9  
At3g20610.1 68416.m02608 non-race specific disease resistance pr...    27   9.9  
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep...    27   9.9  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 509 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 351
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 509 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 351
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 228 KAVEEFLKMYRTGFMPKNLEFSVFYD 305
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 7   CLDSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKEN 120
           CL S W C   + + +   E    K+C C +C    EN
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDEN 79


>At3g10150.1 68416.m01217 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 367

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 103 NKYGIHIFCLYGARLWYCTAEHDGY 29
           + +G+   C Y  +LW C A H GY
Sbjct: 301 HNHGLDWCCPYKDKLWLCFARHTGY 325


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 153 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 248
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1311

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 87  WMPYLLKSKRKFCPSSKXVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTG 266
           W+ +L  SKRK   S +   +    D +  +G+ Y    N+ N+  +K+++ F++ Y   
Sbjct: 354 WLKHLQYSKRKKKISDELCDKEKLSDAFMIVGESY---QNLRNF--RKSLKWFIRSYEGH 408

Query: 267 FMPKNLE 287
               NLE
Sbjct: 409 EAIGNLE 415


>At4g23930.2 68417.m03442 expressed protein hin1 protein homolog,
           Oryza sativa, PIR:T02662
          Length = 160

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 246 LKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYY 350
           L +Y T F P++ E SV   K+   ++A   LFYY
Sbjct: 26  LTVYLTVFRPRDPEISVTSVKVPSFSVANSSLFYY 60


>At3g20610.1 68416.m02608 non-race specific disease resistance
           protein, putative similar to non-race specific disease
           resistance protein NDR1 [Arabidopsis thaliana]
           gi|2754816|gb|AAB95208
          Length = 222

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 171 YKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEF 290
           YK+    ++E+N D  T  K  E+ +KM  +   P+ L F
Sbjct: 162 YKLKASVNLEVNEDGATKVKDKEDGIKMKISDSSPQRLTF 201


>At1g18080.1 68414.m02238 WD-40 repeat family protein /
           auxin-dependent protein (ARCA) / guanine
           nucleotide-binding protein beta subunit, putative
           identical to SP|O24456 Guanine nucleotide-binding
           protein beta subunit-like protein (WD-40 repeat
           auxin-dependent protein ARCA) {Arabidopsis thaliana};
           contains 7 WD-40 repeats (PF00400)
          Length = 327

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -3

Query: 145 LTXLEEGQNFLLLFNKYGIHIFCLYGARLWYCTAEHDGYK 26
           L  L EG+    L     IH  C    R W C A   G K
Sbjct: 220 LWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIK 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,326
Number of Sequences: 28952
Number of extensions: 193576
Number of successful extensions: 502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)