Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31549
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 186 2e-48
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 184 9e-48
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 175 3e-45
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 31 0.10
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 0.72
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 1.3
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 1.7
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 3.8
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 5.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.7
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 8.9
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 8.9
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 186 bits (453), Expect = 2e-48
Identities = 89/170 (52%), Positives = 112/170 (65%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHK
Sbjct: 33 KVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHK 92
Query: 185 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 364
T RG+ AL L+ +G PPPFD LKPGR YC VGRLS E+GWKY D
Sbjct: 93 TARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYND 152
Query: 365 VVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 514
+V KLE++RK K+ Y+ KL + K A +K +P + +GY
Sbjct: 153 IVAKLEERRKVKSA--AFYQAKLAKQKKIAS---AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 184 bits (447), Expect = 9e-48
Identities = 86/157 (54%), Positives = 107/157 (68%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHK
Sbjct: 33 KVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHK 92
Query: 185 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 364
T RG+ AL L+ +G PPPFD LKPGR YC VGRLS E+GWKY D
Sbjct: 93 TARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSD 152
Query: 365 VVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 475
+V KLE++RK K+ Y+ KL + K A K + +
Sbjct: 153 IVSKLEERRKVKSA--AFYQAKLAKQKKIASAKAASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 175 bits (426), Expect = 3e-45
Identities = 77/133 (57%), Positives = 97/133 (72%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHK
Sbjct: 33 KVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHK 92
Query: 185 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 364
T RG AL+ L+ +G PPPFD LKP R YC +GRLS E+GWKY++
Sbjct: 93 TTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKN 152
Query: 365 VVRKLEDKRKGKA 403
+V KLE++RK K+
Sbjct: 153 IVSKLEERRKIKS 165
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 392 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 484
KGK V R+ Y+ K + D+GE+++K P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.72
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 329 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 463
R S E K D K E+KR+ K K+ EKK K+ K+ +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 371 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 490
R + KR+ K +R+AYE+ LKR K EK +K++ T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 383 DKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSYG 511
DKR+ + + YEK+L+ + K+ E + P ++I+ YG
Sbjct: 18 DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 237 GHPSYVRSLLRAFLPRSVLCGIMP 166
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 502 LDDGSEWCCRLRHLLTSILGDPLKFLFIGNSLNSL 398
L D E R+RH S++G+P+ + +I ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 59 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 175
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 216 SLLRAFLPRSVLCGIMPLTVFHRILDGAL 130
S L AFLP+ LC ++PL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 484 WCCRLRHLLTSILGDPLKF 428
W RL + +TSI +PLKF
Sbjct: 853 WALRLLYQITSIWENPLKF 871
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 117 PRAGFTLHLLRRNDISLSLFLKKLP 43
P G H+LR + LS +LKK P
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRP 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,506
Number of Sequences: 5004
Number of extensions: 42811
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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