Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31549
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 165 2e-41
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 165 2e-41
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 164 3e-41
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 163 6e-41
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 32 0.26
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 1.4
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 29 1.9
At5g19400.1 68418.m02312 expressed protein 28 3.2
At4g03180.1 68417.m00435 expressed protein 28 3.2
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 28 4.3
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 27 5.7
At1g53110.1 68414.m06014 expressed protein 27 7.5
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.9
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 165 bits (400), Expect = 2e-41
Identities = 77/148 (52%), Positives = 98/148 (66%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVV+VRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHK
Sbjct: 37 KVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHK 96
Query: 185 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 364
T+RG AL RL+ Y+G P P+D L+ G YC +GRLS E+GW + D
Sbjct: 97 TKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYD 156
Query: 365 VVRKLEDKRKGKAVKRVAYEKKLKRITK 448
+++LE KRK +A V YE+K K++ K
Sbjct: 157 TIKELETKRKERA--HVVYERK-KQLNK 181
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 165 bits (400), Expect = 2e-41
Identities = 76/155 (49%), Positives = 102/155 (65%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
+VVVRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT
Sbjct: 38 IVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKT 97
Query: 188 ERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDV 367
+RG NAL RL+ ++G P P+D L+ G YC +GRLS E+GW + D
Sbjct: 98 KRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDT 157
Query: 368 VRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 472
+++LE+KRK +A +K+L ++ A EKV++
Sbjct: 158 IKELENKRKERAQAVYERKKQLSKLRAKA-EKVAE 191
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 164 bits (399), Expect = 3e-41
Identities = 79/158 (50%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
+VVVVRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHK
Sbjct: 37 EVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHK 96
Query: 185 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 364
T+RG AL RL+ ++G PPP+D L+ G YC +GRLS E+GW + D
Sbjct: 97 TKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYD 156
Query: 365 VVRKLEDKRKGKAVKRVAYEKKLKRITK--DAGEKVSK 472
+++LE KRK ++ +V YE+K K++ K EKV++
Sbjct: 157 TIKELETKRKERS--QVMYERK-KQLNKLRTKAEKVAE 191
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 163 bits (396), Expect = 6e-41
Identities = 76/147 (51%), Positives = 99/147 (67%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
VVVVRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT
Sbjct: 38 VVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKT 97
Query: 188 ERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDV 367
+RG AL RL+ ++G PPP+D L+ G YC +GRLS E+GW + D
Sbjct: 98 KRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDT 157
Query: 368 VRKLEDKRKGKAVKRVAYEKKLKRITK 448
+++LE KRK ++ + YE+K K++TK
Sbjct: 158 IKELEVKRKERS--QALYERK-KQLTK 181
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 31.9 bits (69), Expect = 0.26
Identities = 23/81 (28%), Positives = 33/81 (40%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
V+VV E++ +SG KL R R P +I+ VRGM+P K
Sbjct: 144 VIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KG 202
Query: 188 ERGKNALRRLRTYDGCPPPFD 250
G+ L+ Y G P +
Sbjct: 203 RLGRALFNHLKVYKGPDHPHE 223
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = -1
Query: 174 IMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEM 37
++ L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 14 VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 172
V C Q+ + + R K+ + L +R N+ P+R +HF SK L + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 448 LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 269
L P F F G + + + F N NF+ ++ T + ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057
Query: 268 YNTSTV 251
++T+ V
Sbjct: 1058 FDTAHV 1063
>At4g03180.1 68417.m00435 expressed protein
Length = 185
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 380 EDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 472
+DKRKGK+ KR+ E K+ T++ E+V K
Sbjct: 97 DDKRKGKSNKRIGVEDLYKQ-TREEMERVRK 126
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 509 HRIG*W**MVLSP---STPSHQHPW*SS*VSFHRQLS*QPCPSSCLQAYEQ 366
HRIG +L P + SH+HP S SF ++ Q C C+Q+Y Q
Sbjct: 403 HRIGIDIRCILVPDHFTHESHEHPLFIS-TSFKAEIRCQGCQKECMQSYLQ 452
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 119 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 235
P + PS L K + ++P + +G +R +T+DGC
Sbjct: 14 PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52
>At1g53110.1 68414.m06014 expressed protein
Length = 439
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 371 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTI 496
RKL +K KAV RV E + KR D K KA +++
Sbjct: 316 RKLHEKAAAKAVIRVKKEAEKKRKELDKRAKKKKAVCKSSSV 357
>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 489
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 365 VVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSY 508
VVR+L D KGK ++ A E +R+ + A E K+ + F T++ +
Sbjct: 435 VVRELMDGEKGKKMREKAVE--WQRLAEKATEHKLGSSVMNFETVVSKF 481
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,416
Number of Sequences: 28952
Number of extensions: 238311
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -