Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31548
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    34   0.010
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    34   0.010
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    34   0.010
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   4.7  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   8.1  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAV 49
           VRDMRQTVAVGVIKAV
Sbjct: 424 VRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAV 49
           VRDMRQTVAVGVIKAV
Sbjct: 424 VRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAV 49
           VRDMRQTVAVGVIKAV
Sbjct: 424 VRDMRQTVAVGVIKAV 439


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 175 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 270
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 109 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 213
           + +A A+N +I  TT +    K +  E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 322 IYTLVCSHNKMFQIYYV*PY-INYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSQLY 146
           ++TL+ SHN  + ++Y   Y +  + +L+ K   ++ + + L  F  S HL    ++   
Sbjct: 290 LFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDL--FLSSTHLPATLIASFI 347

Query: 145 EKL 137
           ++L
Sbjct: 348 KRL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,531
Number of Sequences: 5004
Number of extensions: 22739
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)