Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31548
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    33   0.076
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    33   0.076
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    33   0.076
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    33   0.076
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    31   0.41 
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   1.6  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    28   2.9  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   2.9  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   5.0  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    27   6.6  
At1g71970.1 68414.m08319 expressed protein                             26   8.7  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAVN 52
           VRDMRQTVAVGVIK+V+
Sbjct: 414 VRDMRQTVAVGVIKSVD 430


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAVN 52
           VRDMRQTVAVGVIK+V+
Sbjct: 414 VRDMRQTVAVGVIKSVD 430


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAVN 52
           VRDMRQTVAVGVIK+V+
Sbjct: 414 VRDMRQTVAVGVIKSVD 430


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAVN 52
           VRDMRQTVAVGVIK+V+
Sbjct: 414 VRDMRQTVAVGVIKSVD 430


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 2   VRDMRQTVAVGVIKAV 49
           +RDMRQTV VGVIK+V
Sbjct: 80  IRDMRQTVGVGVIKSV 95


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +1

Query: 220 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 318
           I+ K C+   V LFY   ++  N   S  FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 204 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 28
           +C    L + +  +K R  C+   A N  + F+    F A L+TLPPP+         P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511

Query: 27  ATVCLMS 7
           A   +M+
Sbjct: 512 APGAMMT 518


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +1

Query: 220 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 318
           I+ K C+   V L+Y   ++  N   S  FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 274 HNISETFCYDCKLKCKF 324
           + ++  FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 141 NCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 16
           +   +SSS+  PL++ S++  T P P S    A + PT  +C
Sbjct: 106 SATTSSSSHSQPLLSSSSSSATSPAPTS---PANVLPTGNIC 144


>At1g71970.1 68414.m08319 expressed protein
          Length = 225

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 159 YRSCMKNCAVNSSSYFLPLVAFSAALVTLPP 67
           Y SC + CAV  S  +LP    +A+   L P
Sbjct: 191 YGSCRRTCAVTESIVYLPRARKAASYDNLLP 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,029,363
Number of Sequences: 28952
Number of extensions: 114966
Number of successful extensions: 262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)