Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31547
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.4  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.4  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   8.4  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 26  PYCMDSCMNSDHYCPNCNAYIGT 94
           PY +++C N   Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 285 FIXSLSKSSRQVLSVDDYFQKIL 353
           F+ SLSK  R   S  D FQK+L
Sbjct: 770 FVESLSKERRVASSTIDEFQKLL 792


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 130 RNTFT-IMKLSCIGSNVGVAVWTVMVRIHA 44
           RNT++ + K + +GS++G+A W +  R  A
Sbjct: 14  RNTYSALFKGALVGSSLGIAGWLIGNRYSA 43


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 231 LWSIFCSFILKHWR 272
           L SI  SF++KHWR
Sbjct: 469 LLSIISSFLVKHWR 482


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 285 FIXSLSKSSRQVLSVDDYFQKILQGYL 365
           +I   S  SR    V+DY +K+LQ  L
Sbjct: 312 YINGFSDGSRDRQDVEDYLKKVLQELL 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,007
Number of Sequences: 5004
Number of extensions: 35327
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)