Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31547
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    29   2.8  
09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857...    28   4.8  
02_05_1341 - 35801987-35802472                                         27   6.4  
01_07_0237 + 42204301-42205200,42205356-42206030                       27   6.4  

>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 249 CKIYSTELYNIKPNLRLIM*I*NIKTXLYKCKSSNGIQEY 130
           C  YS EL+N  PN+R I  + N  T     +S +  Q+Y
Sbjct: 92  CNPYSAELFNAGPNIRTIPFLCN-STSSSSAQSKDSTQDY 130


>09_04_0244 -
           15984862-15984978,15985054-15985119,15985701-15985793,
           15987284-15987410,15988710-15988840,15989485-15989766,
           15989852-15989985,15990083-15990292,15990456-15990486
          Length = 396

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 75  ATPTLEPIQDNFIIVNVLRIPVCHSMICTYIV 170
           A  T+EP Q +  +V +  +PVC+SM+C  ++
Sbjct: 150 AVVTIEP-QFDLPLVKLHDVPVCYSMLCRPVI 180


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  CMDSCMNSDHYCPNCNAYIGTYT 100
           C+D+ + +   CP+C A +GT T
Sbjct: 103 CIDTWLGTHATCPSCRATVGTST 125


>01_07_0237 + 42204301-42205200,42205356-42206030
          Length = 524

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 498 NISKIVKVRKNLXTRLXILQDLCXKXLKYLE 406
           N+S++VK+  N  T   I+ D C +  +YLE
Sbjct: 174 NVSELVKIMTNDVTMRAIIGDRCPQREEYLE 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,260,187
Number of Sequences: 37544
Number of extensions: 203130
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)