Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31547
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    44   8e-05
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    33   0.088
Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    30   1.1  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    29   1.4  
AL032626-6|CAA21526.1|  132|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF068714-8|AAC17809.2|   86|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical ...    29   2.5  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    27   7.6  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    27   7.6  

>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 11  PCVCLPYCMDSCMNSDHYCPNCNAYIGTYTR*F 109
           P   +P+C+DSC ++ HYCP CNA +G   R F
Sbjct: 125 PLAFVPFCLDSCKDAHHYCPRCNALLGIKKRIF 157


>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 13/27 (48%), Positives = 23/27 (85%)
 Frame = +2

Query: 23  LPYCMDSCMNSDHYCPNCNAYIGTYTR 103
           +P+C+++  +++HYCP+C A+IGTY R
Sbjct: 79  VPFCVETFKDAEHYCPSCRAWIGTYRR 105


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 5   GLPCVC-LPYCMDSCMNSDHYCPNCNAYIGTYTR 103
           G  C C LP+C+ SC +  H CPNC A IG + R
Sbjct: 107 GCWCCCFLPFCLRSCKDIIHTCPNCRAMIGVHRR 140


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 20  CLPYCMDSCMNSDHYCPNCNAYIGTYTR 103
           C+P+ +D  ++ +H CP C  ++G + R
Sbjct: 90  CVPFFLDQLLDVNHSCPACKKFLGRFNR 117


>Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical
           protein F35E8.2 protein.
          Length = 133

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 160 VQIIEWHTGIRNTFTIMKLSCIGSNVGVAVWT 65
           VQ++ W + +R    ++ LSC   N    +WT
Sbjct: 3   VQVVSWFSWLREPIQLLDLSCTSFNGTAFIWT 34


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 14   CVCLP-YCMDSCMNSDHYCPNCNAYIG 91
            CVCLP Y  D C N  H C + N + G
Sbjct: 1947 CVCLPDYTGDYCDNQIHSCSDINCFNG 1973


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 17  VCLPYCMDSCMNSDHYCPNCNAYIGTYTR 103
           +CL  C D   + DH CPNC   + T  R
Sbjct: 72  ICL--CFDVSKDVDHNCPNCGLLLATSNR 98


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 8   LPCVCLPYCMDSCMNSDHYCPNCNAYIGTYTR 103
           LPC  + +     M+  H CPNCN  +G   R
Sbjct: 56  LPCFIVCFWCRCFMDVHHRCPNCNKSLGKRDR 87


>AL032626-6|CAA21526.1|  132|Caenorhabditis elegans Hypothetical
           protein Y37D8A.6 protein.
          Length = 132

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 11  PCVCLPYCMDSCMNSDHYCPNCNAYIGTYTR 103
           P +C  +C+D   +S H CPNC   + +Y R
Sbjct: 103 PLLCC-FCLDGFKDSRHSCPNCGTIL-SYKR 131


>AF068714-8|AAC17809.2|   86|Caenorhabditis elegans Hypothetical
           protein B0348.2 protein.
          Length = 86

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  VCLPYCMDSCMNSDHYCPNCNAYI 88
           +C   C DS  ++ HYCP+C   +
Sbjct: 56  ICYWLCCDSSKDTMHYCPSCGTLL 79


>AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical
           protein B0348.1 protein.
          Length = 87

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 17  VCLPYCMDSCMNSDHYCPNCNAYIGT 94
           +C   C  S  ++ HYCP+C   + T
Sbjct: 56  ICYWLCCQSSKDTLHYCPSCGTLLAT 81


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
            receptor protein1 protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 11   PCVCLPYCMDSCMNSDHYCPNCNAYIGTYTR 103
            PC  LP  + S  +  H CP C+  +G + R
Sbjct: 987  PCSPLPCFLSSFSDFVHICPLCSHIMGRFRR 1017


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
            ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 11   PCVCLPYCMDSCMNSDHYCPNCNAYIGTYTR 103
            PC  LP  + S  +  H CP C+  +G + R
Sbjct: 987  PCSPLPCFLSSFSDFVHICPLCSHIMGRFRR 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,203,496
Number of Sequences: 27780
Number of extensions: 200820
Number of successful extensions: 474
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)