Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31547
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.59 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +2

Query: 140 MPFDDLHLYSXVFIFHIHMINLKFGLMLYSSVEYILQFHLKA 265
           +PF+ + + + +  +   +    F LML S + Y+ + H+ A
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDA 337


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 161 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSN 60
           S ++R  + N  Y +NY    Y   C++   + N
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 125 IAYSCMPFDDLHLYSXVFIFHIHMINL 205
           +A   MPF+  +L    +IF IH+  L
Sbjct: 85  VAILVMPFNVAYLLLGKWIFGIHLCKL 111


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 125 IAYSCMPFDDLHLYSXVFIFHIHMINL 205
           +A   MPF+  +L    +IF IH+  L
Sbjct: 85  VAILVMPFNVAYLLLGKWIFGIHLCKL 111


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 125 IAYSCMPFDDLHLYSXVFIFHIHMINL 205
           +A   MPF+  +L    +IF IH+  L
Sbjct: 85  VAILVMPFNVAYLLLGKWIFGIHLCKL 111


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 47  MNSDHYCPNCNAYIGTYTR*FH 112
           M   HYC   N Y    T  FH
Sbjct: 6   MAGQHYCLRWNNYQSNMTSVFH 27


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -3

Query: 161 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSN 60
           S +++  + N  Y +NY    Y   C++   + N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -3

Query: 161 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSN 60
           S +++  + N  Y +NY    Y   C++   + N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -3

Query: 161 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSN 60
           S +++  + N  Y +NY    Y   C++   + N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 38  DSCMNSDHYCPNCNAYIGTYTR*F 109
           +SC+  +  CP+ N   G  T+ F
Sbjct: 434 ESCLPEEILCPHFNVTDGETTKTF 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,379
Number of Sequences: 438
Number of extensions: 2455
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)