Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31547
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    29   2.3  
At5g13390.1 68418.m01542 expressed protein                             27   7.1  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    27   9.4  

>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 161 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSNGPNSCTSPC 33
           S  H   Y+N + +  YE  L  FQC    L   G  +C + C
Sbjct: 405 STKHDDRYKNLKMLFPYEEFLKFFQCEVFDLSPRGLVNCGNSC 447


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 119 ERIAYSCMPFDDLHLYSXVFIFHIHMINLKFGLMLYSSVEY 241
           ER+ ++C+PF     ++   I  + M N  +  +L++ V Y
Sbjct: 177 ERLLFACVPFTASSFFAWATISAVGMNNSSYYFLLFACVFY 217


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 32  CMDSCMNSDHYCPNCNAYIGTY 97
           C   C N  + CP C+  IG Y
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNY 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,639
Number of Sequences: 28952
Number of extensions: 172160
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)