Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31545
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate perme...    32   0.28 
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate permease
           family protein 6 protein.
          Length = 823

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 423 FCASYARSFYKNKIILHVDCGLYVQLTKLVDSVV---FNQDGCFSCVYTLPVPFLVGVV 256
           F   +A      + ++ V CG   QL+ L+ S+V   F   G   C+  LP P L  +V
Sbjct: 413 FFGCFAGGSSLGRTMMQVKCGTKSQLSTLITSIVLIIFVCGGAVGCIQHLPKPVLASIV 471


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 KRALKSDVQDLTAKLKLMESGGDAPAEPVVTTDHHLYCNIH-LGKE 244
           + AL+++++ L AKLK +E         ++    HL   +H LG E
Sbjct: 546 EEALRAEIEQLEAKLKAVEQAKAEALNSLLAEKEHLQAQLHQLGVE 591


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 KRALKSDVQDLTAKLKLMESGGDAPAEPVVTTDHHLYCNIH-LGKE 244
           + AL+++++ L AKLK +E         ++    HL   +H LG E
Sbjct: 546 EEALRAEIEQLEAKLKAVEQAKAEALNSLLAEKEHLQAQLHQLGVE 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,842,406
Number of Sequences: 27780
Number of extensions: 229694
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)