Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31545
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   10.0 

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 150 LAVRS*TSDLSARFITFHCLA 88
           +A+     DLS R+I F+CL+
Sbjct: 108 VAISFFNDDLSTRWIAFNCLS 128


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 150 LAVRS*TSDLSARFITFHCLA 88
           +A+     DLS R+I F+CL+
Sbjct: 108 VAISFFNDDLSTRWIAFNCLS 128


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 150 LAVRS*TSDLSARFITFHCLA 88
           +A+     DLS R+I F+CL+
Sbjct: 108 VAISFFNDDLSTRWIAFNCLS 128


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 509 KRRPVNCNTTHYRANWVPGP 450
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 149 KLKLMESGGDAPAEPVVTTDHHLY 220
           K+ L+E+G D PA   + ++  LY
Sbjct: 94  KVLLLEAGPDEPAGAEIPSNLQLY 117


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 275 LFWLVLYQAELLFLSEYYSISD 210
           ++WL+LY + +     +YS+ D
Sbjct: 5   IWWLILYFSIVCQAKAHYSLRD 26


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 262 TNQKRHGQRVHTR 300
           T  +RH Q VHTR
Sbjct: 16  TRLRRHIQNVHTR 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,492
Number of Sequences: 438
Number of extensions: 2662
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)