Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31545
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa...    27   9.9  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   9.9  

>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 119 LKSDVQDLTAKLKLMESGGDAPAEPVVTTDHHLYCN 226
           L+ ++ +    LK  ++  D P E V+T  +HL+CN
Sbjct: 813 LRQELSEFKEILKC-KACNDRPKEVVITKCYHLFCN 847


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 80  VTLLAPRERKRHIHSRPGSNW*XCRS 3
           + LLAPR+R +  +    SNW  C+S
Sbjct: 261 IPLLAPRDRAKSSYKVLKSNWKRCKS 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,006,863
Number of Sequences: 28952
Number of extensions: 208904
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)