Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31541
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 30 0.18
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 29 0.31
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 2.9
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 26 2.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.9
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 5.1
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 25 5.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 5.1
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 25 6.7
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 6.7
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 6.7
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 8.9
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 8.9
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 8.9
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 327 STLTNI-SRYDLPDPETYRDFFRLNPLYEFQQLSATCTYFRGCPITRLDVAIAY 485
+ +TNI S + P + L YE+ SAT F CP+T +D A +Y
Sbjct: 605 NAITNIASLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPLTTIDPAFSY 658
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 29.5 bits (63), Expect = 0.31
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 234 YYNHKTIFGNKKLIADAITENPQNYHIYEGLSTLTNISRYDLPDP 368
Y H +F ++ ++ I +P H + GL TL +I+ YD DP
Sbjct: 274 YKEHNGVFVEQQALSHMIYSHPI-VHKHVGLVTLRSINAYDSSDP 317
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 198 NHAKMVDCYLTTYYNHKTIFGNKKLIADAITE 293
N ++ + +T YN+ +FG+ K++ DA+++
Sbjct: 663 NDDHIIRQFKSTVYNYAGLFGDDKVVKDALSK 694
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 320 LVDVVILRIFSNGVSYELLVAKNCFMVIV--GSKVTINHLRMVPHSN 186
+VD ++ R+F ++++VA N + I+ G+ I L +VP +N
Sbjct: 230 IVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSAN 276
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 295 IRKITTSTRGLAHLPIFQGMTCRIRKHTEISSG*IRCTNSNNCRQHAPTSAGVRSQGSTS 474
I + ++ R L H P T ++I C NS NCR+ +SA G +
Sbjct: 194 IESLLSALRNLGHYPERASKT---PLESQIIQSLFHCLNSENCRRRYQSSAKCSVPGFNA 250
Query: 475 L 477
L
Sbjct: 251 L 251
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 415 WNSYNGFSRKKSLYVSGSGKSYL 347
WNSY F + +LY +GK ++
Sbjct: 654 WNSYKFFEAQAALYKKVTGKDFV 676
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 478 IATSSLVIGHPRK*VHVADNCWNSYNGFSRKKSLYVSGSGKSYLEIL 338
I L+I HP K + N W + G K S+ + ++ LE +
Sbjct: 286 IHIDKLLIDHPEKRPSIMQNLWKTIEGSIAKGSIGFTMVHRAMLEFI 332
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 88 DCCRPRSASCCVTCDT-PSTNASKT 159
D C R +S DT PSTNAS T
Sbjct: 55 DICPNRQSSSSTAADTSPSTNASNT 79
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 116 QLALLGLQQSHGRSALVRHRPQRHRVHDRGLRG 18
QLA L Q ++ L H+ ++H V D G G
Sbjct: 228 QLASLPDQNEGSQTTLAMHQTRKHPVTDNGATG 260
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 91 CCRPRSASCCVTCDTPSTNAS 153
CC+ + C+ C+TP NA+
Sbjct: 207 CCKHLAHVNCINCNTPWANAT 227
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 79 RPCDCCRPRSASCCV 123
RPCD CR R + C V
Sbjct: 23 RPCDNCRLRKSRCVV 37
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -2
Query: 197 PHSNGKSPSTSDFVFDAFVDGVSQVTQQLALLGLQQSHGRSA-LVRHRPQRHRVHDRGLR 21
P +GKS S D + ++ + +L +H L ++ P V RGL
Sbjct: 33 PQGSGKSTLAS--ALDTELTRKNESVVKFSLDDFYLTHAEQVELAKNNPNNPLVQHRGLA 90
Query: 20 GTH 12
GTH
Sbjct: 91 GTH 93
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 215 NHLRMVPHSNGKSPSTSDFVFDAFVDGVSQ 126
+HLR V + S + D V+DAF++ + +
Sbjct: 506 SHLRSVYQTTLLSNTDLDLVYDAFINAIGE 535
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 138 IDKRIENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTIFG 260
+D N+I+ AR+ R+ + +M DC L N + + G
Sbjct: 96 VDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPG 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,329
Number of Sequences: 5004
Number of extensions: 40305
Number of successful extensions: 128
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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