Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31541
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0075 + 13242374-13242940 32 0.24
09_02_0148 - 4998052-4998618 32 0.24
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 1.3
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 30 1.3
01_06_1343 - 36461476-36461961,36463355-36463519 29 1.7
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 29 2.9
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 28 3.9
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 27 6.8
04_04_0500 - 25677767-25680850 27 8.9
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 27 8.9
>11_04_0075 + 13242374-13242940
Length = 188
Score = 32.3 bits (70), Expect = 0.24
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Frame = +3
Query: 135 AIDKRIENKIASARRFAVRVRNHAKMVDCY-LTTYYNHKTIFGNKKLIADAITEN-PQNY 308
A+D+ + I RR RV + ++ ++++ I+GN +L +TE P
Sbjct: 61 AMDRYLAKTITELRRLQARVVMLDRRIEPLGHQGHFDNAIIYGNHEL--QPLTETLPPPM 118
Query: 309 HIYEGLSTLTNI------SRYDLPDPETYRDFFRLNPLYEFQQ 419
IY ++T + +R +PDP D L P YEF++
Sbjct: 119 GIYHNINTRARMRVGFHRNRRTMPDPALAGDPVLLGPFYEFER 161
>09_02_0148 - 4998052-4998618
Length = 188
Score = 32.3 bits (70), Expect = 0.24
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Frame = +3
Query: 135 AIDKRIENKIASARRFAVRVRNHAKMVDCY-LTTYYNHKTIFGNKKLIADAITEN-PQNY 308
A+D+ + I RR RV + ++ ++++ I+GN +L +TE P
Sbjct: 61 AMDRYLAKTITELRRLQARVVMLDRRIEPLGHQGHFDNAIIYGNHEL--QPLTETLPPPM 118
Query: 309 HIYEGLSTLTNI------SRYDLPDPETYRDFFRLNPLYEFQQ 419
IY ++T + +R +PDP D L P YEF++
Sbjct: 119 GIYHNINTRARMRVGFHRNRRTMPDPALAGDPVLLGPFYEFER 161
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -2
Query: 251 CFMVIVGSKVTINHLRMVPHSNGKSPSTSDFVFDAFVDGVSQVTQQLALLGLQQSHGRSA 72
C + G +V + +L + H +GKSP T D+ G + AL G+ ++ R+
Sbjct: 802 CAITEPGQQVAMKNLLEIEHEHGKSPKTRQ-SSDSLSGGTDAAIARDALEGMIETLSRTK 860
Query: 71 LVRHRPQRHRV 39
R RH +
Sbjct: 861 DSIGRATRHAI 871
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 254 NCFMVIVGSKVTINHLRMVPHSNGKS 177
N +++VG+K +NHLR VP +G++
Sbjct: 148 NIVIMMVGNKSDLNHLRSVPEEDGQA 173
>01_06_1343 - 36461476-36461961,36463355-36463519
Length = 216
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 254 NCFMVIVGSKVTINHLRMVPHSNGKSPSTSD 162
N +++VG+K +NHLR VP +G + S +
Sbjct: 117 NIVVMMVGNKSDLNHLRSVPEEDGHAFSEKE 147
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -2
Query: 449 PAEVGACCRQLLEFVQRIQPEEISVCFRIRQVIP*NIGKCAKPLVDVVILRIFSNGVSYE 270
PA G+ R+ R E + VC + +P +G C P V+L I + Y+
Sbjct: 41 PATRGSAPRRAALLTARASAEPLEVCAKASLTVPDRLGDC--PFTQRVLLTIEEKHLPYD 98
Query: 269 L 267
+
Sbjct: 99 I 99
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 147 RIENKIASARRFAVRVRNHAKMVDCYLTTY--YNHKTIFGNKKLIADAITENPQNY 308
R+ N IAS +R +HA + Y+ + H+ G K+LI D+ + + Y
Sbjct: 434 RLSNDIASTKREQAGDHHHASTIQSYMLQHGATAHEACVGIKELIEDSWKDMMKEY 489
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 76 ERPCDCCRPRSASCCVTC 129
E PC CR R AS C+ C
Sbjct: 46 ESPCPACRGRVASGCLAC 63
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +3
Query: 165 ASARRFAVRVRNHAKMVDCYLTTYYNHKTIFGNKKLIADAITENPQNYHIYEGLSTLTNI 344
A R ++R + AK C T N ++F L+ D +P N IYE L LT +
Sbjct: 954 AKVTRESMREKGVAKFPGCSWITVGNKTSLF----LVQDKY--HPDNLRIYEMLGDLTGM 1007
Query: 345 SRYD 356
+ D
Sbjct: 1008 MKKD 1011
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 336 TNISRYDLPDPETYRDFFRLNPLYEFQQLSATCTYFRGCPITRLDVAIA 482
TN+ + ++ T R FFR N LYE ++L C Y IT V +A
Sbjct: 229 TNLHQINILVISTSRWFFRRNYLYEGEELIG-CIYCSEDNITSFSVPMA 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,901
Number of Sequences: 37544
Number of extensions: 278453
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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