Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31541
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24447| Best HMM Match : TolA (HMM E-Value=1.3) 29 1.7
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_36917| Best HMM Match : RinB (HMM E-Value=2.2) 27 9.2
SB_4834| Best HMM Match : Coiled (HMM E-Value=8.1) 27 9.2
>SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)
Length = 325
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 264 KKLIADAITENPQNYHIYEGLSTLTNISRYDL-PDPETYRDFFRLN 398
KK+IADAI E + + G + + S++DL P+ + D F+ N
Sbjct: 219 KKIIADAIAEANKKNAVKTGTKSSGSSSKFDLTPEAKLVSDNFKTN 264
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -2
Query: 290 SNGVSYELLVAKNCFMVIVGSKVTINHLRMVPHSNGKSPSTSDFVFDAFVDGVSQVTQQL 111
S+ S LL +C ++ G + NH++ V + F A D V+
Sbjct: 341 SSNHSNVLLKCDSCNEMVTGKRALRNHMKKVHQTTTTKCEFCKKEFTALEDLERHVSSNH 400
Query: 110 ALLGL---QQSHGRSALVRHRPQRHR 42
L + + HG+S L RH +RH+
Sbjct: 401 DLSCIFCRKLFHGKSLLERHVSKRHK 426
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 397 IRCTNSNNCRQHAPTSAGVRSQGSTSLSPMTCRSLWANT 513
+ N +NC +GVR + +L+P R +WA T
Sbjct: 828 VASANVHNCMGSFLKISGVRLREGQTLTPTAIRKMWATT 866
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.5 bits (58), Expect = 6.9
Identities = 34/130 (26%), Positives = 47/130 (36%)
Frame = +1
Query: 100 PRSASCCVTCDTPSTNASKTKSLVLGDLPFE*GTMRRWLIVTLLPTITIKQFLATRSS*L 279
P++ S T +TPSTN K L + FE +M R + L I + + + S
Sbjct: 324 PKTPSTPCTPNTPSTNRKKIFISAL-EFAFETWSMER--VHFLKIDIDLVDIITSTPS-- 378
Query: 280 TPLLKIRKITTSTRGLAHLPIFQGMTCRIRKHTEISSG*IRCTNSNNCRQHAPTSAGVRS 459
TP T ST P C + S+ T S C P + S
Sbjct: 379 TPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPRTPSTPCTHSTPGTPSTPS 438
Query: 460 QGSTSLSPMT 489
ST +P T
Sbjct: 439 TPSTPSTPST 448
>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -2
Query: 515 LVFAHKLRQVIGDSDVEPCDRTPAEVGACCRQLLEFVQRIQPEEISVCFRIRQVIP*NIG 336
+VF +L+ V+G D P + C QL ++VQ Q + + + ++ P +G
Sbjct: 198 MVFFIELKHVLGRISDAMFDLLPKDFPITCEQLYKYVQGHQEQVLFILDGYDEIKPSRVG 257
Query: 335 KCAKPLVDVVILR 297
L+ ILR
Sbjct: 258 D-VHDLISGKILR 269
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 503 HKLRQVIGDSDVEPCDRTPAEVGACCRQLLEFVQRIQPEE 384
HKL Q + + EP A+ A RQ+ E Q++Q +E
Sbjct: 2212 HKLEQDLLEFSKEPGGEVNADAVALKRQIRELEQKVQDQE 2251
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 288 TENPQNYHIYEGLSTLTNISRYDLPDPETYRDFFRLNPLYEFQQL 422
T+ +++++ G T TN++ + P P YRD +LN L + QL
Sbjct: 3939 TKEQKSFYL-PGWGTKTNLTYAECPFPWRYRDTGQLNTLPYWGQL 3982
>SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)
Length = 522
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 313 STRGLAHLPIFQGMTCRIRKHTEISSG*IRC-----TNSNNCRQHAPTSAG 450
ST+G + + R+RKH+ S I C T + R H+PT +G
Sbjct: 209 STQGARESMSREMLAARVRKHSANDSARISCDIKPITGARKTRIHSPTKSG 259
>SB_4834| Best HMM Match : Coiled (HMM E-Value=8.1)
Length = 221
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 363 DPETYRDFFRLNPLYEFQQLSATCTYFRGCPITRLDVAIAYDLPEL 500
D E +++F+ N + +++A T G LD+ I YD+ E+
Sbjct: 37 DDEIAQNYFKENTSCQINRITAAVTQENGESPMELDIEIDYDVIEI 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,007
Number of Sequences: 59808
Number of extensions: 325046
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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