Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31541
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    29   1.4  
At4g18430.1 68417.m02735 Ras-related GTP-binding protein, putati...    28   3.2  
At5g54730.1 68418.m06815 expressed protein                             28   4.3  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    28   4.3  
At4g38050.1 68417.m05374 xanthine/uracil permease family protein...    27   7.5  
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    27   7.5  
At1g16920.1 68414.m02051 Ras-related GTP-binding protein, putati...    27   7.5  
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.9  
At4g08190.1 68417.m01354 Ras-related GTP-binding protein, putati...    27   9.9  
At3g19780.1 68416.m02504 expressed protein                             27   9.9  

>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 327 STLTNISRYDLPDPETYRDFFRLNPLYEFQQLSATCTYFRGCPITRL 467
           +T  N + + LPD  T + F  L+      Q SA CT FR C I  L
Sbjct: 420 ATHYNYNSWSLPDELTIKVFSGLDTK-SLMQASACCTMFRKCSIDPL 465


>At4g18430.1 68417.m02735 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein GI:303742 from [Pisum
           sativum]
          Length = 217

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 254 NCFMVIVGSKVTINHLRMVPHSNGKSPSTSDFVF 153
           N  +++VG+K  + HLR VP    +S S  + +F
Sbjct: 118 NVVIMLVGNKADLRHLRAVPTEEARSFSERENMF 151


>At5g54730.1 68418.m06815 expressed protein
          Length = 763

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -2

Query: 419 LLEFVQRIQPEEISVCFRIRQVIP*NIGKCAKPLVDVVILRI---FSNGVSYELLVAKNC 249
           LL     IQ   I+V FRI   I  +  +  K      + R+   F+N V  ++  +K+ 
Sbjct: 360 LLLVTASIQGHNINV-FRIMPTI--STSRAVKTTTFAHLFRLQRGFTNAVIQDICFSKDS 416

Query: 248 FMVIVGSKVTINHL-RMVPHSNGKSP 174
            +++VGS    +HL  + P   G +P
Sbjct: 417 NLIVVGSSRGTSHLFEINPEKEGDAP 442


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
           protein contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 85  CDCCRPRSASCCVTCDTPSTNA-SKTKSLV 171
           C C   RS SCC  C TPS+++  K K L+
Sbjct: 43  CYCVSSRS-SCCCCCSTPSSSSFVKPKVLI 71


>At4g38050.1 68417.m05374 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 703

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 127 CDTPSTNASKTKSLVLGDLPFE*GTMRRWLIVTLLPTITIK 249
           C T ++NA +T S V    PF+ G +  +L +  +P   +K
Sbjct: 421 CRTDASNAWRTASWVRIPYPFQWGGLGMYLFLFAIPVFLLK 461


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 267 KLIADAITENPQNYHIYEGLSTLTNISRYDLPDPETYRDFFRLNPLYEFQQLSATCTYFR 446
           KL    ++ NP NY  +EGL     +  Y      +     +LN LY  Q LS    Y R
Sbjct: 244 KLYRVLLSMNPDNYRYHEGLQKCLGL--YSESGQYSSDQIEKLNALY--QSLSE--QYTR 297

Query: 447 GCPITRLDVAIAYD--LPELVGKY 512
              + R+ +    D    E V KY
Sbjct: 298 SSAVKRIPLDFLQDENFKEAVAKY 321


>At1g16920.1 68414.m02051 Ras-related GTP-binding protein, putative
           similar to GTP binding protein GI:218228 from [Vicia
           faba]; identical to cDNA small GTP-binding protein
           (Rab11) GI:451859
          Length = 216

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 254 NCFMVIVGSKVTINHLRMVPHSNGKS 177
           N  +++VG+K  + HL  VP  +GKS
Sbjct: 118 NIVVMLVGNKSDLRHLLAVPTEDGKS 143


>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 257 KNCFMVIVGSKVTINHLRMVPHSNGKSPSTSDFVFDAFVDGV--SQVTQQLALLGLQQSH 84
           K+   V +GS VTIN   ++  + G S S   F++   V  V  ++  + +    +++ +
Sbjct: 264 KSVIYVSIGSLVTINETELMEIAWGLSNSDQPFLWVVRVGSVNGTEWIEAIPEYFIKRLN 323

Query: 83  GRSALVRHRPQRHRVHDRGLRG 18
            +  +V+  PQ+  +  R + G
Sbjct: 324 EKGKIVKWAPQQEVLKHRAIGG 345


>At4g08190.1 68417.m01354 Ras-related GTP-binding protein, putative
           similar to Ras-related protein Rab11A
           (Swiss-Prot:Q96283) [Arabidopsis thaliana]
          Length = 127

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 254 NCFMVIVGSKVTINHLRMVPHSNGKSPSTSDFV 156
           N  +++ G+K  +NHLR V   +G    +  F+
Sbjct: 81  NIVIMMAGNKADLNHLRSVAEEDGHKTESLSFL 113


>At3g19780.1 68416.m02504 expressed protein
          Length = 1014

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 315 YEGLSTLTNISRYDLPDPETYRDFFRLNP 401
           YEG S++T+I+ +        R+FFRL P
Sbjct: 761 YEGESSVTDITEFLARHANNSREFFRLLP 789


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,784
Number of Sequences: 28952
Number of extensions: 216844
Number of successful extensions: 673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)