Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31540
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    31   0.10 
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   2.9  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   2.9  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    26   2.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   2.9  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   5.1  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   6.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   6.7  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   8.9  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 365 TGITLSFESTNLQRKSSKADLTFGASVPILTFTSISIIP-PAQPLSIANSDIQGTIVNTP 189
           T I L   ST  Q     ++L     VP  TF+  +++P P+ PL+   S +QG ++N P
Sbjct: 181 TPIQLYDPSTQRQMARPMSNLQASQPVPSSTFSRSAVVPNPSLPLN--PSVLQGQVMNNP 238

Query: 188 LI 183
            I
Sbjct: 239 TI 240


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 334 LVDSNESVIPVLKKAGALKMCRNHRL 411
           ++D   + I  LK   A K+CR HRL
Sbjct: 675 VLDGVRTYIKALKYGDAFKVCRTHRL 700


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 341 STNLQRKSSKADLTFGASVPILTFTSISIIPPAQPLSIANSDIQGT 204
           STNL +K+S +D+    S+P+            +P S AN+    T
Sbjct: 395 STNLPQKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPT 440


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  WDAYNVDESNDPTALVVSMSYKE 138
           +D Y + ES DP A+VV M+Y+E
Sbjct: 128 YDFY-IGESMDPDAMVVLMNYRE 149


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 13  VKKNDFSICRYIQSTIRFLWDAYNVDESNDP 105
           +K +D S+ RY    + +L++  N+ E +DP
Sbjct: 776 LKISDISLFRYFGKPLAYLFNEENLKEESDP 806


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 205 VPWISEFAIESGWAGGIIEMLVKVKIGTLAPNVKSAFEDFLCRLVDSNESV 357
           V + +  A  SG   G +E+ V+  +GT+   + S  E+F   L  ++ S+
Sbjct: 158 VEYNTTLATASGTVPGTVEV-VEPAVGTVTTTIYSGSEEFTTTLASASGSI 207


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 342 LKRKCYTCPQKSRCPKNVSESSTNGSWQEIIW*LGNLFNKIL 467
           L+R+  T  +K    K+  ES+T  S QE+I      F+K L
Sbjct: 4   LRRQALTLAEKKAIRKHYFESATKPSQQELISWFEEHFHKKL 45


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/67 (25%), Positives = 24/67 (35%)
 Frame = -2

Query: 371 LRTGITLSFESTNLQRKSSKADLTFGASVPILTFTSISIIPPAQPLSIANSDIQGTIVNT 192
           L   I+L   ST      S + LT     PI         PP +  S    ++  T +N 
Sbjct: 266 LEQKISLLLSSTRNSPTMSNSSLTHLLPTPIFVGDVTGFYPPPENTSYFVLNLSNTTLNV 325

Query: 191 PLIVCIP 171
              +C P
Sbjct: 326 KNELCFP 332


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 16  KKNDFSICRYIQSTIRFLWDAYNVDESNDPTALVVSMSYKEHWNEIA 156
           +KN    C  +      L   + +D S   TA +VSM Y   W  +A
Sbjct: 59  RKNGTIECWNVNQEPPILSSLWQLDSSLLETASIVSMKYSNGWLMLA 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,079
Number of Sequences: 5004
Number of extensions: 44833
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)