Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31540
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1250 + 28709429-28710208                                         31   0.55 
02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671...    29   2.2  
08_02_1289 - 25923916-25924586,25925148-25926630                       29   2.9  
04_04_0749 - 27757262-27757827,27758058-27759074,27761026-27761188     28   5.1  
01_07_0109 - 41131714-41132988                                         28   5.1  
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           27   6.8  
10_01_0354 - 3887790-3890204                                           27   8.9  
07_03_0260 + 15928932-15929255,15930174-15930347                       27   8.9  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    27   8.9  

>06_03_1250 + 28709429-28710208
          Length = 259

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 328 CRLVDSNESVIPVLKKAGALKMCRNHRLMDLGKKLFGD 441
           CR  +   SV+PV+KK G +++C + R  DL K    D
Sbjct: 21  CRYAERVSSVVPVIKKNGKVRVCIDFR--DLNKATLKD 56


>02_03_0097 +
           15166077-15166349,15166623-15166694,15166715-15167161,
           15167579-15167794,15167873-15168213,15168329-15168947
          Length = 655

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 328 CRLVDSNESVIPVLKKAGALKMCRNHRLMDLGK 426
           CR  +   S++PV+KK G +++C + R  DL K
Sbjct: 590 CRYAEWVSSIVPVIKKNGKVRVCIDFR--DLNK 620


>08_02_1289 - 25923916-25924586,25925148-25926630
          Length = 717

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 344 ESTNLQRKSSKADL-TFGASV-PILTFTSISIIPPAQP-LSIANSDIQGTIVNTP 189
           E     R S K+D+   G  +  ILT    S  PP QP  + AN D+ G + +TP
Sbjct: 577 ERRQFGRSSKKSDVWCLGILILEILTGRPPSYDPPPQPEAATANGDLVGAVASTP 631


>04_04_0749 - 27757262-27757827,27758058-27759074,27761026-27761188
          Length = 581

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 139 HWNEIADLW-FLGMQTMSGVLTIVPWISEFAIESGWAG 249
           +W  I + + FLG+Q M+G+     W S  A+   W G
Sbjct: 222 NWLNIHNFYYFLGVQMMAGLFQSSGWPSVVAVVGNWFG 259


>01_07_0109 - 41131714-41132988
          Length = 424

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 253 IIEMLVKVKIGTLAPNVKSAFEDFLCRLVDSNESVIPVLKKAGALKMCRNHRLMDLGKKL 432
           ++E+  ++    L P+V  A  D   R     + V P    A   ++C + R  DLG   
Sbjct: 271 VVELCTRIPYTALRPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSR--DLGSTR 328

Query: 433 FG 438
            G
Sbjct: 329 LG 330


>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 106 TALVVSMSYKEHWNEIADLW-FLGMQTMSGVLTIVPWISEFAIESGWAG 249
           TA+  ++    +W  I + + FL +Q ++G+   + W S  AI   W G
Sbjct: 159 TAVFTALFGAGYWLNIHNFYYFLVIQMIAGLFQAIGWPSVVAIVGNWFG 207


>10_01_0354 - 3887790-3890204
          Length = 804

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +1

Query: 316 EDFLCRLVDSNESVIPVLKKA-----GALKMCRNH 405
           ED LC++V  +  ++PVLK +      ALK C ++
Sbjct: 397 EDHLCKIVQGDRDIMPVLKLSYNALPAALKPCLSY 431


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 WNEIADLWFLGMQTMSGVLTIVPWISEFAIESG 240
           W E+   W L + T+ GVL   PW    A+ +G
Sbjct: 69  WLELLLHWPLSVATLYGVLARRPWAGATALAAG 101


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 52  STIRFLWDAYNVDESNDPTALVVSMSYKEHWNEIAD 159
           S++R LW+  NV++    T  ++++  +E WN+I +
Sbjct: 661 SSVRSLWEKQNVEQ----TEQLIAIREREKWNKILE 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,279
Number of Sequences: 37544
Number of extensions: 247143
Number of successful extensions: 586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)