Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31540
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38093| Best HMM Match : CDO_I (HMM E-Value=9)                       30   1.3  
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_49610| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=3.9)           29   2.3  
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)                     28   4.0  
SB_47077| Best HMM Match : Kinesin (HMM E-Value=1.7e-27)               28   4.0  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)                 27   6.9  
SB_26722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_38093| Best HMM Match : CDO_I (HMM E-Value=9)
          Length = 226

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 133 KEHWNEIADLWFLGMQTMSGVLTIVPWISEFAIESGW 243
           ++ W ++A+LW LG Q ++  +     I +    SGW
Sbjct: 159 QKEWEDMAELWSLGTQVLTASIEQHSAIKDIVKASGW 195


>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = -2

Query: 242 QPLSIANSDIQGTIVNTPLIVCIPRNHKSAISFQCSL*LMDTTKAVGSFDSSTLYASQRN 63
           +P   A   ++  + NTP++     N K  ++ QC         A+        YAS+  
Sbjct: 572 EPQQKALDALKDAVTNTPILRYF--NVKECVTLQCDASQFGLGAALLQNGQPVAYASRAL 629

Query: 62  LIVD*IYLQIEKSFFFTLFA 3
              + +Y QIEK     +FA
Sbjct: 630 TSAETLYAQIEKELLAIVFA 649


>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -2

Query: 374 FLRTGITLSFESTNLQRKSSKADLTFGASVPILTFTSISIIPPA 243
           FL  GI L     +LQ       LT     P+LT T   + PPA
Sbjct: 482 FLSPGIPLPIIGADLQSLHLMLTLTMSPLTPLLTLTMSPLTPPA 525


>SB_49610| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=3.9)
          Length = 200

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 247 GGIIEMLVKVKIGTLAPNVKSAFEDFLCRLVDSNESVIPVLKKAGALKMCRNHRLMDLGK 426
           GG++E  ++V    ++  V     D LC+ + ++E V   L     L + R  RL+ L  
Sbjct: 81  GGLVESTIQVATQAISYIVPIDDSDALCKDLQNDELVKRELSNFAGLLVLRGGRLVALAS 140

Query: 427 KLF 435
            LF
Sbjct: 141 GLF 143


>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
          Length = 1557

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 145 SSVPY-SSWTQLKQSDHLIHLHCMH-PKET**LIE 47
           +S+ Y SSW  L ++DH+I L C + P ET  L E
Sbjct: 704 TSIVYPSSWDTLDETDHVIWLMCRYVPPETLTLFE 738


>SB_47077| Best HMM Match : Kinesin (HMM E-Value=1.7e-27)
          Length = 212

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 85  VDESNDPTALVVSMSYKEHWNE-IADL 162
           +DE+ND  A  V+MSY E +NE I DL
Sbjct: 123 MDETNDDMAYKVTMSYLEIYNEMIRDL 149


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -2

Query: 284 PILTFTSISIIPPAQPLSIANSDIQGTIVNTPLIVCIPRNHKSAISFQCSL*LMDTTKAV 105
           P+   TS+ ++PP Q L+         +  +PL V  P    + +     L ++   K+ 
Sbjct: 528 PLQVLTSVQVLPPLQVLAPLQVLTPLQVSLSPLQVLTPLQVSTPLQVLIPLQVLPLYKSS 587

Query: 104 GSFDSSTLYAS 72
             + SS LY S
Sbjct: 588 ALYKSSPLYKS 598


>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
          Length = 716

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 247 GGIIEMLVKVKIGTLAPNVKSAFEDFLCRLVDSNESVIPVLKKAGALKMCRNHRLMDLGK 426
           GG++E  ++V    ++  V     D LC+ + ++E V   L     L + +  R++ L  
Sbjct: 622 GGLVESTIQVATQAISYVVPIDDSDALCKDLQNDELVKRELSNFAGLLVLKGGRMVALAS 681

Query: 427 KLF 435
            LF
Sbjct: 682 ALF 684


>SB_26722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 276 NFHKHFNYSTGPTTF 232
           N+ KHF Y TGP +F
Sbjct: 152 NYQKHFTYFTGPNSF 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,346
Number of Sequences: 59808
Number of extensions: 310825
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)