Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31540
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09340.1 68416.m01108 amino acid transporter family protein l...    30   0.80 
At3g09330.1 68416.m01107 amino acid transporter family protein b...    30   0.80 
At1g61563.1 68414.m06936 rapid alkalinization factor (RALF) fami...    29   1.4  
At2g39130.1 68415.m04807 amino acid transporter family protein b...    28   3.2  
At4g17550.1 68417.m02624 transporter-related similar to cAMP ind...    28   4.3  
At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to a...    28   4.3  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   4.3  
At4g23840.1 68417.m03428 leucine-rich repeat family protein            27   7.5  

>At3g09340.1 68416.m01108 amino acid transporter family protein low
           similarity to vesicular GABA transporter [Rattus
           norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 528

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 354 CYTCPQKSRCPKNVSESSTNGS-WQEIIW*LGNLFNKILLFVER*QCCIQYLLL 512
           CYT     RC ++ S+  T     Q      G L   ILL++E   CC++Y+++
Sbjct: 178 CYTGILLKRCLESSSDLRTYPDIGQAAFGFTGRLIISILLYMELYVCCVEYIIM 231


>At3g09330.1 68416.m01107 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 524

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 354 CYTCPQKSRCPKNVSESSTNGS-WQEIIW*LGNLFNKILLFVER*QCCIQYLLL 512
           CYT     RC ++ S+  T     Q      G L   ILL++E   CC++Y+++
Sbjct: 178 CYTGILLKRCLESSSDLRTYPDIGQAAFGFTGRLIISILLYMELYVCCVEYIIM 231


>At1g61563.1 68414.m06936 rapid alkalinization factor (RALF) family
           protein contains Pfam domain PF05498: Rapid
           ALkalinization Factor (RALF)
          Length = 82

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 217 ISKEL*LILH-SLSAFLGTINLQFHSSVPYSSWTQLKQSDHLIHLHCMHP 71
           +SK + +IL  +L  FL     +  +SV Y ++  + + DH +H    HP
Sbjct: 3   MSKSIKVILSLALVVFLALAGTKVEASVRYITYPAIDRGDHAVHCDKAHP 52


>At2g39130.1 68415.m04807 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 444 GNLFNKILLFVER*QCCIQYLLL 512
           G +F  I+L++E   CC++Y++L
Sbjct: 235 GRIFVSIVLYLELYACCVEYIIL 257


>At4g17550.1 68417.m02624 transporter-related similar to cAMP
           inducible 2 protein [Mus musculus] GI:4580997, glycerol
           3-phosphate permease [Homo sapiens] GI:7543982; contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 544

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 142 WNEIADLWFLGMQTMSGVLTIVPWISEFAIESGWAG 249
           WN  A  +FL MQ  +G+     W S  A+   W G
Sbjct: 167 WNIHAFWFFLVMQMAAGLFQATGWPSVVAVVGNWFG 202


>At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to
           alpha-expansin precursor GI:4027891 from [Nicotiana
           tabacum]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 342 LKRKCYTCPQKSRCPKNVSESSTNGSW 422
           LK K  T    + CP N +++S NG W
Sbjct: 95  LKGKSITITATNFCPPNFAQASDNGGW 121


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -3

Query: 154 QFHSSVPYSSWTQLKQSDHLIH--LHCMHPKET**LIEYIYKLKNHSFSLC 8
           +F++++P SS T  ++S +L H   +  H +    L+ YI+KL+N   SLC
Sbjct: 530 EFNNAIP-SSLT--RESPYLTHPIFNMYHTEHE--LLRYIHKLQNKDLSLC 575


>At4g23840.1 68417.m03428 leucine-rich repeat family protein
          Length = 597

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 127 SWTQLKQSDHLIHLHCMH 74
           SWT + Q+ ++ HL C+H
Sbjct: 216 SWTSITQTPNIPHLECLH 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,583
Number of Sequences: 28952
Number of extensions: 218975
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)