Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31539
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   3e-40
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     29   2.3  
SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  161 bits (391), Expect = 3e-40
 Identities = 78/110 (70%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
 Frame = -2

Query: 515  GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG-ILGYTEDQVVSS 339
            GKLTGMAFRVPVA+VSVVDLT RL KPA YE IK  VK+A+E    G  LGYTEDQVVS+
Sbjct: 999  GKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASESKEMGQYLGYTEDQVVST 1058

Query: 338  DFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSK 189
            DFIG+  SS+FDA AGI LND FVKL++WYDNEYGYS RV+DL++Y+ S+
Sbjct: 1059 DFIGERVSSVFDARAGIQLNDKFVKLVTWYDNEYGYSHRVVDLMRYMASR 1108


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 488 VPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 348
           V  A V+VV     +    S++A K  VK+  E PL   L YT DQ+
Sbjct: 147 VAAAAVAVVVCVGSVCSTISFQAYKTWVKQHGEEPLLPGLNYTNDQL 193


>SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
 Frame = -2

Query: 290 ISLNDNFVKLISWYDNEYGYSSRVI------DLIKYIQSKD*TLDQM 168
           +SL D+F+KL++ +++    S  V       D++K IQSK+  LD M
Sbjct: 575 VSLTDDFLKLVTTFNDGRQQSDLVASVVERPDVLKRIQSKEAPLDIM 621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,787,577
Number of Sequences: 59808
Number of extensions: 228653
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)