Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31539
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    27   0.087
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    27   0.15 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.15 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 0.087
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 287 SLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 195
           SL++N++  IS Y+N+  Y+ ++   I YI+
Sbjct: 84  SLSNNYISNISNYNNDNNYNKKLYYNINYIE 114


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 287 SLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 195
           SL++N++  IS Y+N   Y+ ++   I YI+
Sbjct: 84  SLSNNYISNISNYNNNNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 287 SLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 195
           SL++N++  IS Y+N   Y+ ++   I YI+
Sbjct: 322 SLSNNYISNISNYNNNNNYNKKLYYNINYIE 352


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 168 HLIKSLIFRLNVLDEINDSAGIT 236
           H+  SLI   + L E+N S  IT
Sbjct: 290 HIKDSLIVLTSALQEMNKSKSIT 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,779
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)