Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31539
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04120.1 68416.m00436 glyceraldehyde-3-phosphate dehydrogenas... 166 9e-42
At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas... 166 9e-42
At1g13440.1 68414.m01570 glyceraldehyde 3-phosphate dehydrogenas... 165 2e-41
At1g16300.1 68414.m01951 glyceraldehyde 3-phosphate dehydrogenas... 163 8e-41
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas... 101 4e-22
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 100 7e-22
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 100 1e-21
At5g10500.1 68418.m01216 kinase interacting family protein simil... 31 0.46
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 29 1.9
At1g17360.1 68414.m02116 COP1-interacting protein-related simila... 28 4.3
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.5
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.5
At1g24350.1 68414.m03071 expressed protein contains Pfam domain,... 27 7.5
>At3g04120.1 68416.m00436 glyceraldehyde-3-phosphate dehydrogenase,
cytosolic (GAPC) / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase identical to
SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase,
cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}
Length = 338
Score = 166 bits (403), Expect = 9e-42
Identities = 76/106 (71%), Positives = 93/106 (87%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 336
GKLTGM+FRVP +VSVVDLTVRL K A+Y+ IK+ +KE +EG LKGILGYTED VVS+D
Sbjct: 230 GKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTD 289
Query: 335 FIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 198
F+GD+ SSIFDA AGI+L+D FVKL+SWYDNE+GYSSRV+DLI ++
Sbjct: 290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHM 335
>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 422
Score = 166 bits (403), Expect = 9e-42
Identities = 76/106 (71%), Positives = 93/106 (87%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 336
GKLTGMAFRVP +NVSVVDLT RL K ASYE +K +K A+EGPLKGILGYT++ VVS+D
Sbjct: 310 GKLTGMAFRVPTSNVSVVDLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSND 369
Query: 335 FIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 198
F+GDS SSIFDA AGI L+ +FVKL+SWYDNE+GYS+RV+DLI+++
Sbjct: 370 FVGDSRSSIFDANAGIGLSKSFVKLVSWYDNEWGYSNRVLDLIEHM 415
>At1g13440.1 68414.m01570 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative very
strong similarity to SP|P25858 Glyceraldehyde
3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 338
Score = 165 bits (401), Expect = 2e-41
Identities = 75/106 (70%), Positives = 93/106 (87%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 336
GKLTGM+FRVP +VSVVDLTVRL K A+Y+ IK+ +KE +EG +KGILGYTED VVS+D
Sbjct: 230 GKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTD 289
Query: 335 FIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 198
F+GD+ SSIFDA AGI+L+D FVKL+SWYDNE+GYSSRV+DLI ++
Sbjct: 290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHM 335
>At1g16300.1 68414.m01951 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 420
Score = 163 bits (395), Expect = 8e-41
Identities = 75/106 (70%), Positives = 92/106 (86%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 336
GKLTGMAFRVP NVSVVDLT RL K ASYE +K +K A+EGPL+GILGYTE+ VVS+D
Sbjct: 308 GKLTGMAFRVPTPNVSVVDLTCRLEKDASYEDVKAAIKFASEGPLRGILGYTEEDVVSND 367
Query: 335 FIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 198
F+GDS SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI+++
Sbjct: 368 FLGDSRSSIFDANAGIGLSKSFMKLVSWYDNEWGYSNRVLDLIEHM 413
>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
chloroplast, putative / NADP-dependent
glyceraldehydephosphate dehydrogenase, putative similar
to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
chloroplast precursor (EC 1.2.1.13) (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 399
Score = 101 bits (241), Expect = 4e-22
Identities = 49/102 (48%), Positives = 67/102 (65%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 336
GKL G+A RVP NVSVVDL V++ K E + ++AAE LKGIL ++ +VS D
Sbjct: 289 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVD 348
Query: 335 FIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDL 210
F SS D++ + + D+ VK+I+WYDNE+GYS RV+DL
Sbjct: 349 FRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 390
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 100 bits (239), Expect = 7e-22
Identities = 48/110 (43%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPA-SYEAIKQKVKEAAEGPLKGILGYTEDQVVSS 339
GKL G+A RVP NVSVVDL + + K + E + + ++AA GP+KGIL + +VS
Sbjct: 308 GKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSV 367
Query: 338 DFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSK 189
DF S+ D++ + + D+ VK+++WYDNE+GYS RV+DL + SK
Sbjct: 368 DFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASK 417
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/102 (46%), Positives = 67/102 (65%)
Frame = -2
Query: 515 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 336
GKL G+A RVP NVSVVDL V++ K E + +++AE LKGIL ++ +VS D
Sbjct: 286 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVD 345
Query: 335 FIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDL 210
F S+ D++ + + D+ VK+I+WYDNE+GYS RV+DL
Sbjct: 346 FRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 387
>At5g10500.1 68418.m01216 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 848
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 238 YSLSYQLISFTKLSFKEIPAAASKIEECESPMKSEDTT*SSVYP 369
Y +LISF + SFK A A + + +++ +TT +SV+P
Sbjct: 59 YKRRPELISFVEESFKAYRALAERYDHISKELQNANTTIASVFP 102
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 238 YSLSYQLISFTKLSFKEIPAAASKIEECESPMKSEDTT*SSVYP 369
Y +LISF + S++ A A + + + +++ +TT +SV+P
Sbjct: 3 YKKRPELISFVEESYRAYRALAERYDHISTELQNANTTIASVFP 46
>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
[Arabidopsis thaliana]
Length = 1032
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 416 KQKVKEAAEGPLKGILGYTE-DQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLIS 255
+++ KE E P+KG E + +V + IGD S+ + S N+N+ L S
Sbjct: 814 EEEEKEVLENPVKGEEEAREMETLVVEEDIGDETPSLTEIVENSSENENYTSLRS 868
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 449 RLGKPASYEAIKQKVKEAAEGPL-KGILGYTE-------DQVVSSDFIGDSHSSIFDAAA 294
R+ K A + A+K K+A++ L KGI GYT+ +Q +SS+ G SH + A+A
Sbjct: 169 RVLKKADH-ALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPL-RASA 226
Query: 293 GISLNDNF 270
I ++ F
Sbjct: 227 HIRVSARF 234
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -2
Query: 449 RLGKPASYEAIKQKVKEAAEGPL-KGILGYTE-------DQVVSSDFIGDSHSSIFDAAA 294
R+ K A + A+K K+A++ L KGI GYT+ +Q +SS+ G SH + A+A
Sbjct: 169 RVLKKADH-ALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPL-RASA 226
Query: 293 GISLNDNF 270
I ++ F
Sbjct: 227 HIRVSARF 234
>At1g24350.1 68414.m03071 expressed protein contains Pfam domain,
PF02681: Uncharacterized BCR, COG1963
Length = 168
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = -2
Query: 497 AFRVPVANVSVVDLT-VRLGKPASYEAIKQKVKE-------AAEGPLKGILGYTEDQVVS 342
A + +A+V + D T VRL E + Q V E A PL+ +LG+T QVV+
Sbjct: 88 AIALILASVVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHTPPQVVA 147
Query: 341 SDFIGDS 321
+G +
Sbjct: 148 GGMLGSA 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,028,730
Number of Sequences: 28952
Number of extensions: 159564
Number of successful extensions: 459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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