Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31538
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   227   8e-61
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   227   8e-61
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   5e-07
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   2.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   3.8  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.1  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.1  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   8.9  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  227 bits (555), Expect = 8e-61
 Identities = 104/140 (74%), Positives = 121/140 (86%)
 Frame = +3

Query: 24  PEXIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 203
           P  +  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPN
Sbjct: 4   PAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPN 63

Query: 204 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 383
           SAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVV
Sbjct: 64  SAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVV 123

Query: 384 KVANVSLLALYKEKKERPRS 443
           KVA V L AL+ EKKE+PR+
Sbjct: 124 KVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  227 bits (555), Expect = 8e-61
 Identities = 104/140 (74%), Positives = 121/140 (86%)
 Frame = +3

Query: 24  PEXIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 203
           P  +  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPN
Sbjct: 4   PAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPN 63

Query: 204 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 383
           SAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVV
Sbjct: 64  SAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVV 123

Query: 384 KVANVSLLALYKEKKERPRS 443
           KVA V L AL+ EKKE+PR+
Sbjct: 124 KVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +3

Query: 141 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 320
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 321 AGFGRKGHAVGDIPGVRFKVVK 386
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 322 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 206
           ++S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 382 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 272
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 78  WADKEFKKAHMGTKWKANPFGGASHAKGIV 167
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 84  PPIAVHDGGSRAYAP 40
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 440 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 318
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 PRDGCLNHIEENDEVLVAGFGRKGHAVG 353
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,795
Number of Sequences: 5004
Number of extensions: 45221
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)