Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31538
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   234   3e-62
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   234   3e-62
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   146   1e-35
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   5e-07
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    30   0.96 
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    29   2.9  
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880     28   3.9  
04_01_0440 + 5746474-5746662,5746895-5747251                           28   3.9  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   6.8  
01_01_0357 - 2816650-2817897                                           27   6.8  

>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  234 bits (573), Expect = 3e-62
 Identities = 106/133 (79%), Positives = 119/133 (89%)
 Frame = +3

Query: 45  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 224
           RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 69

Query: 225 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 404
           RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 70  RVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

Query: 405 LALYKEKKERPRS 443
           LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  234 bits (573), Expect = 3e-62
 Identities = 106/133 (79%), Positives = 119/133 (89%)
 Frame = +3

Query: 45  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 224
           RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 181 RKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 239

Query: 225 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 404
           RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 240 RVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 299

Query: 405 LALYKEKKERPRS 443
           LAL+KEKKE+PRS
Sbjct: 300 LALFKEKKEKPRS 312



 Score =  231 bits (564), Expect = 3e-61
 Identities = 104/131 (79%), Positives = 117/131 (89%)
 Frame = +3

Query: 45  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 224
           RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 69

Query: 225 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 404
           RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 70  RVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

Query: 405 LALYKEKKERP 437
           LAL+KEKKE+P
Sbjct: 130 LALFKEKKEKP 140


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  146 bits (353), Expect = 1e-35
 Identities = 65/94 (69%), Positives = 75/94 (79%)
 Frame = +3

Query: 45  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 224
           RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC 
Sbjct: 82  RKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCA 140

Query: 225 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 326
           RVQL+KNGKK+ AFVP DGCLN I+EN+   V G
Sbjct: 141 RVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +3

Query: 306 DEVLVAGFGRKGHAVGDIPGVRFKVVK 386
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 340 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 164
           P    P+T   S S+  F  P   T+A +  PF  + +            A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336

Query: 163 MPF 155
            PF
Sbjct: 337 SPF 339


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 355 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 245
           +PT  P  PNP  ST    SM F+ PS    A   FP
Sbjct: 3   TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38


>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
          Length = 898

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 337 LRPNPATSTSSFSSMWFRQPSRGT 266
           L P+ +T T +FS  WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219


>04_01_0440 + 5746474-5746662,5746895-5747251
          Length = 181

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 74  AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 172
           A+GG      P GY+ +G PF  C    KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 474 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 325
           T GH+++  P+ L     LCR   E     + ++  P  E  E H+  DL   I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191


>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 354 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 268
           H+ ++  DR+PPLVLR   + G   R  G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,395,523
Number of Sequences: 37544
Number of extensions: 343210
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)