Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31538
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 211 3e-55
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 176 1e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.026
SB_3221| Best HMM Match : rve (HMM E-Value=3) 29 1.7
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 4.0
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3) 28 4.0
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 6.9
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6) 27 6.9
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 27 6.9
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5) 27 9.2
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 211 bits (515), Expect = 3e-55
Identities = 94/115 (81%), Positives = 106/115 (92%)
Frame = +3
Query: 24 PEXIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 203
P +RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPN
Sbjct: 3 PRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPN 62
Query: 204 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 368
SAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 63 SAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 176 bits (428), Expect = 1e-44
Identities = 81/91 (89%), Positives = 89/91 (97%)
Frame = +3
Query: 171 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 350
++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112
Query: 351 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 443
GDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 35.5 bits (78), Expect = 0.026
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 156 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 272
KG+ ++ + K+PNSA RKC ++L NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = -3
Query: 466 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 287
S T TYDL SF+S+ + + LAT +K++P + + L+P A S S
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66
Query: 286 RQPSRGTNAV 257
+Q R N V
Sbjct: 67 QQCWRSLNTV 76
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 101 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 199
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 169 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 74
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
Length = 471
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 281 TVTGDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 165
T D+ F NE AD R GL+ NF+ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197
>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
Length = 255
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 61 TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 153
T V R N++KP +R+GR+T+S+ +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133
>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
Length = 294
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 269 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 165
D+ F NE AD R GL+ NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148
>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 256
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 93 ILCPPIAVHDGGSRAYAPFV 34
++ PP + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234
>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
Length = 63
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 279 GCLNHIEENDEVLVAGFGRKGHA 347
G N +EEN +LV G GRKG++
Sbjct: 39 GNANLLEENRLILVTGDGRKGYS 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,412,053
Number of Sequences: 59808
Number of extensions: 388376
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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