Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31538
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   229   6e-61
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   221   3e-58
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    34   0.065
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   2.5  
At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein...    29   2.5  
At3g55040.1 68416.m06112 In2-1 protein, putative similar to In2-...    28   4.3  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   4.3  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.3  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.3  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   7.5  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    27   9.9  
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl...    27   9.9  
At4g10550.1 68417.m01727 subtilase family protein contains simil...    27   9.9  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    27   9.9  
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  229 bits (561), Expect = 6e-61
 Identities = 105/133 (78%), Positives = 119/133 (89%)
 Frame = +3

Query: 45  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 224
           RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 69

Query: 225 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 404
           RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 70  RVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

Query: 405 LALYKEKKERPRS 443
           LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  221 bits (539), Expect = 3e-58
 Identities = 103/133 (77%), Positives = 116/133 (87%)
 Frame = +3

Query: 45  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 224
           RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCA 69

Query: 225 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 404
           RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 70  RVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

Query: 405 LALYKEKKERPRS 443
           LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 33.9 bits (74), Expect = 0.065
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +3

Query: 192 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 371
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 372 FKVVK 386
              ++
Sbjct: 95  SHCIR 99


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 378 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 494
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


>At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein /
           molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)
           identical to SP|Q39054 Molybdopterin biosynthesis CNX1
           protein (Molybdenum cofactor biosynthesis enzyme CNX1)
           {Arabidopsis thaliana}
          Length = 670

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 7/132 (5%)
 Frame = +3

Query: 6   LSKWVNPEXIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVG- 182
           L+ W +P  +R  R  +    +      EF +A +  KWK N   G     G V E  G 
Sbjct: 344 LAGWTSPHPLRV-RLRLQEPIKSDPIRPEFHRAII--KWKDNDGSGTP---GFVAESTGH 397

Query: 183 ------VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGH 344
                 +  +  N+ +       ++  G  V+A +  D     I++   +   G  RK  
Sbjct: 398 QMSSRLLSMRSANALLELPATGNVLSAGSSVSAIIVSDISAFSIDKKASLSEPGSIRKEK 457

Query: 345 AVGDIPGVRFKV 380
              ++PG  +KV
Sbjct: 458 KYDEVPGPEYKV 469


>At3g55040.1 68416.m06112 In2-1 protein, putative similar to In2-1
           protein, Zea mays, P49248
          Length = 292

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 81  PIAVHDGGSRAYAPFVXPRGLPIWIAR 1
           P+ V DG +R Y  +  P     WIAR
Sbjct: 73  PVQVFDGSTRLYISYTCPFAQRAWIAR 99


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 331 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPFLMSCTR 224
           P PA+ST SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 78  WADKEFKKAHMGTKWKANPFGGASHAKG 161
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 78  WADKEFKKAHMGTKWKANPFGGASHAKG 161
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 240 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 401
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 513  ILHFMNL*TTRFPTAGHLSQCTPMILVAPFSLCRERGETRWLLLPP 376
            +LHF+NL  ++     HL Q   M+++   +   + G+T W ++ P
Sbjct: 1731 VLHFLNLFQSKQLGHDHLVQAMQMLILPMLAHAFQNGQT-WEVIDP 1775


>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to caffeine
           synthase [Camellia sinensis][GI:9967143],
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292],
           S-adenosyl-L-methionine:salicylic acid carboxyl
           methyltransferase [Clarkia breweri][GI:6002712]
          Length = 619

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 268 TNAVTFFPFLMSCTRTHLRMAELGCLASTPTFS 170
           T A+        C+ +HL++A+LGC     TFS
Sbjct: 41  TTAINSIKLTEGCS-SHLKIADLGCAIGDNTFS 72


>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 78  WADKEFKKAHMGTKWKANPFGGASHAKG 161
           W+    + A + T WK +PFG    A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 412 RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFL 239
           +A +  L  F +LKR   ++ +  PL     TS S FSS        G N + F  F+
Sbjct: 460 KASQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNIIEFPEFI 517


>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 630

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 394 LATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGT 266
           LAT +T         T+ PL PNPAT +  +   W R P   T
Sbjct: 43  LATESTDHDPSNHQSTSTPLPPNPATGSPLYQENW-RSPIPNT 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,411
Number of Sequences: 28952
Number of extensions: 254630
Number of successful extensions: 648
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)