Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31536
         (370 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   0.57 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   3.0  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    20   9.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.2  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 258 PNTIGSRNGTGICPCICRLASGTWRLVI 341
           PN I   NGTG+     RLA+G   LV+
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIALVL 188


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 315 QGDKCTDIFLCRFSNL 268
           +GD C D+  C  S L
Sbjct: 55  EGDNCRDVIQCTSSGL 70


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory
          receptor candidate 33 protein.
          Length = 321

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 38 SGKRWPVSETL 6
          SGK WP+S  L
Sbjct: 17 SGKLWPISIVL 27


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 199 SENEDAENCRDPP 237
           S +ED  NCRD P
Sbjct: 68  SISEDPLNCRDLP 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,991
Number of Sequences: 336
Number of extensions: 1802
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)