Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31536
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   161   4e-41
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   161   4e-41
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   0.93 
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   2.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.7  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   3.7  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   3.7  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          25   4.9  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   6.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    24   8.6  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    24   8.6  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  161 bits (390), Expect = 4e-41
 Identities = 73/118 (61%), Positives = 92/118 (77%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 184
           +AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRI
Sbjct: 11  RAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRI 67

Query: 185 LTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGR 358
           LTG V   KM RT++IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+
Sbjct: 68  LTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQ 124


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  161 bits (390), Expect = 4e-41
 Identities = 73/118 (61%), Positives = 92/118 (77%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 184
           +AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRI
Sbjct: 11  RAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRI 67

Query: 185 LTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGR 358
           LTG V   KM RT++IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+
Sbjct: 68  LTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQ 124


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 339 SPISTSLKQGDKCTDIFLCRFSN 271
           SP   SL  GD   +IFL ++SN
Sbjct: 255 SPFEYSLLSGDNANEIFLTKYSN 277


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 250 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 143
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 232 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 125
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 128 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 30
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 11  FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 187
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 188 TGV 196
           TGV
Sbjct: 222 TGV 224


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 367 GLHSPDRYNITNLHVPEARRQMHGHIPVP 281
           GLH     ++ NLH PE    + G + +P
Sbjct: 137 GLHPKLHVHLKNLHKPEDECSLQGFMYIP 165


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  RKGGMKRKDMRHHKNVGLGFKTPREAIEG 127
           R G     D++  +N+G+ F+TP +   G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -2

Query: 306 KCTDIFLCRFSNL--LYLGR 253
           K +D+F+C +SNL  LY+ R
Sbjct: 113 KISDVFVCVYSNLNILYISR 132


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 354 PIVTISPISTSLKQGDKCTDIFLCRFSN 271
           P+ TI+  +  L  G +  D+FL  FSN
Sbjct: 18  PVTTIALYNNHLYFGTEGGDVFLYNFSN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,842
Number of Sequences: 5004
Number of extensions: 29702
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)