Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31536
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             181   1e-46
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          29   1.2  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   2.1  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         28   2.1  
SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   27   6.3  
SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)                 27   6.3  
SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  181 bits (441), Expect = 1e-46
 Identities = 84/134 (62%), Positives = 106/134 (79%), Gaps = 16/134 (11%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEGTYI 136
           +A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAIEGTYI
Sbjct: 7   RAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYI 66

Query: 137 DKKCPFTGNVSIRGRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPC 316
           DKKCPFTGNVSIRGRILTG+ + MKM+RT++IRRDYLHY+ KYNRFEKRH+N++ H SPC
Sbjct: 67  DKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPC 126

Query: 317 FRDVEIGDIVTIGR 358
           FRD+ +GD++T+G+
Sbjct: 127 FRDIALGDLITVGQ 140


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 364 LHSPDRYNITNLHVPEARRQMHGHIPVPF 278
           LH+P   N   LH+P    Q   HIP PF
Sbjct: 631 LHTPHLLNQALLHIPHPLSQALLHIPYPF 659


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 137 QCRYPQSPLWEF*SLNQHSYGDACP 63
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 182 ILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 319
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 328 HVPEARRQMHGHIPVPFLEP 269
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 181
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 182 ILTGVVQK 205
              G  Q+
Sbjct: 276 ARAGNAQR 283


>SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -2

Query: 333 ISTSLKQGDKCTDIFLCRFSN 271
           IS  LK GD CTD FL  FSN
Sbjct: 43  ISKRLKSGD-CTDNFLSSFSN 62


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 161 NVSIRGRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMS 298
           N++IR   +   + +  +Q  V  R DY+  +  ++   K HR++S
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLS 193


>SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)
          Length = 285

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 244 VIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTLLVNVGT 125
           V+  DH+ ++ + F+ D+G D    R+   E   L  +GT
Sbjct: 184 VLPPDHNQTVQVKFMVDSGSDVTTLRHDVIERLGLPRIGT 223


>SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 251 YLPKYNRFE--KRHRNMSVHLSPCF 319
           Y  K++RF    ++RN S+H+SP F
Sbjct: 33  YSSKFHRFNIFHKYRNFSLHISPVF 57


>SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 175 ADRNVTSEGTLLVNVGTLNRLSGSFEA*TNILMVTH 68
           +DR +T++ TLL++ G+  +    F    ++L+  H
Sbjct: 103 SDRQITTDSTLLIDTGSQYKYVTRFHRNDDLLLYNH 138


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 140 KKCPFTGNVSIRGRILTGVVQKMKMQR----TVVIRRDYLHYLPKYNRFEKRHRNMSVHL 307
           K+ P T ++ I G I +   QK K+        V++RD      K + FE +   ++  +
Sbjct: 32  KQIP-TQDLRIDGYISSMEKQKKKLSGEKALNAVLQRDVQEMCTKISNFEVKEEKLTAEI 90

Query: 308 SPCFRDVEIGDIV 346
               R VE+G+ V
Sbjct: 91  KAKDRQVELGEEV 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,428
Number of Sequences: 59808
Number of extensions: 234607
Number of successful extensions: 607
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)