Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31536
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.28 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 176 GRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSP 313
           G +L GVV K KM R  +    + H +   N+FE     + +H+SP
Sbjct: 590 GMVLAGVVGK-KMPRYCL----FGHNVTLANKFESLSEPLRIHVSP 630


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 28  RFPEQERWHEEEGHAS 75
           R P +  WH  E H S
Sbjct: 149 RTPTEASWHSPEAHIS 164


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 105 VLKPKPTFLW*RMSFLFMP 49
           +LKPKP +   ++S L +P
Sbjct: 40  ILKPKPLWTGKQISSLIIP 58


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 271 VRETAQEYVRAFVALLQ 321
           VR     Y+R+F  LLQ
Sbjct: 538 VRTPTDSYIRSFFELLQ 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,450
Number of Sequences: 438
Number of extensions: 1883
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)