Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31536
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   159   4e-40
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           154   2e-38
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           151   2e-37
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.32 
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    31   0.32 
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    29   0.73 
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    28   2.2  
At4g26980.1 68417.m03882 expressed protein                             27   2.9  
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ...    26   6.8  
At5g55610.1 68418.m06934 expressed protein                             26   9.0  
At3g11000.1 68416.m01328 expressed protein                             26   9.0  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  159 bits (387), Expect = 4e-40
 Identities = 78/123 (63%), Positives = 92/123 (74%), Gaps = 5/123 (4%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVS 169
           KAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPFTG VS
Sbjct: 7   KAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVS 66

Query: 170 IRGRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVT 349
           IRGRIL+G     KMQRT+++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD VT
Sbjct: 67  IRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVT 125

Query: 350 IGR 358
           IG+
Sbjct: 126 IGQ 128


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  154 bits (374), Expect = 2e-38
 Identities = 74/123 (60%), Positives = 89/123 (72%), Gaps = 5/123 (4%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVS 169
           KAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPFTG VS
Sbjct: 7   KAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVS 66

Query: 170 IRGRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVT 349
           IRGRIL G     KMQRT+++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD + 
Sbjct: 67  IRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHII 125

Query: 350 IGR 358
           IG+
Sbjct: 126 IGQ 128


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  151 bits (365), Expect = 2e-37
 Identities = 75/123 (60%), Positives = 89/123 (72%), Gaps = 5/123 (4%)
 Frame = +2

Query: 5   KAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVS 169
           KAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPFTG VS
Sbjct: 7   KAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVS 66

Query: 170 IRGRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVT 349
           IRGRIL G     KMQRT+++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ GD V 
Sbjct: 67  IRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVI 125

Query: 350 IGR 358
           IG+
Sbjct: 126 IGQ 128


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 32  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 160
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 191 GVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVH 304
           G V   KMQ++VV+  D L +   YNR+ KR      H
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAH 43


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 179 RILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRNMSVH 304
           + + G V   KMQ +VV+  D L +   YNR+ KR      H
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAH 43


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 176 GRILTGVVQKMKMQRTVVIRRDYLHYLPKYNRFEKRHRN 292
           G+++ GVV+    +R V + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 101 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 205
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO3 (dimethylaniline
           monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
           from Oryctolagus cuniculus, [SP|P97501] from Mus
           musculus; contains Pfam profile PF00743 Flavin-binding
           monooxygenase-like domain
          Length = 459

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  EQERWHEEEGHASP*ECWFRLQNSQRG 117
           E   W  EE H SP E W R+Q  +RG
Sbjct: 390 EYLNWIAEECHCSPVENW-RIQEVERG 415


>At5g55610.1 68418.m06934 expressed protein 
          Length = 329

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 282 GTGICPCICRLASGTW 329
           G GIC C+ R ++G W
Sbjct: 288 GAGICSCLIRPSTGQW 303


>At3g11000.1 68416.m01328 expressed protein
          Length = 488

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 324 SLKQGDKCTDIFLCRFSNL 268
           +LK+GD C  IF C+FS +
Sbjct: 5   NLKKGDLCGVIFGCKFSTI 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,442,312
Number of Sequences: 28952
Number of extensions: 163368
Number of successful extensions: 381
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)